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北大西洋罗卡尔海槽中塑料的细菌定殖:对深海塑料圈的深入理解。

Bacterial colonisation of plastic in the Rockall Trough, North-East Atlantic: An improved understanding of the deep-sea plastisphere.

机构信息

School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom.

School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom; Minderoo-UWA Deep Sea Research Centre, University of Western Australia, Oceans Institute, IOMRC Building, 35 Stirling Highway, Perth, WA, 6009, Australia.

出版信息

Environ Pollut. 2022 Jul 15;305:119314. doi: 10.1016/j.envpol.2022.119314. Epub 2022 Apr 18.

Abstract

Plastic pollution has now been found within multiple ecosystems across the globe. Characterisation of microbial assemblages associated with marine plastic, or the so-called 'plastisphere', has focused predominantly on plastic in the epipelagic zone. Whether this community includes taxa that are consistently enriched on plastic compared to surrounding non plastic surfaces is unresolved, as are the ecological implications. The deep sea is likely a final sink for most of the plastic entering the ocean, yet there is limited information on microbial colonisation of plastic at depth. The aim of this study was to investigate deep-sea microbial communities associated with polystyrene (PS) and polyurethane (PU) with Bath stone used as a control. The substrates (n = 15) were deployed in the Rockall Trough (Atlantic), and recovered 420 days later from a depth of 1796 m. To characterise the bacterial communities, 16S rRNA genes were sequenced using the Illumina MiSeq platform. A dominant core microbiome (taxa shared across all substrates) comprised 8% of total ASVs (amplicon sequence variant) and accounted for 92% of the total community reads. This suggests that many commonly reported members of the plastisphere are simply opportunistic which freely colonise any hard surface. Transiently associated species consisted of approximately 7% of the total community. Thirty genera were enriched on plastic (P < 0.05), representing 1% of the total community. The discovery of novel deep-sea enriched taxa included Aurantivirga, Algivirga, IheB3-7, Spirosoma, HTCC5015, Ekhidna and Calorithrix on PS and Candidatus Obscuribacter, Haloferula, Marine Methylotrophic Group 3, Aliivibrio, Tibeticola and Dethiosulfatarculus on PU. This small fraction of the microbiome include taxa with unique metabolic abilities and show how bacterial communities can be shaped by plastic pollution at depth. This study outlines a novel approach in categorising the plastisphere to elucidate the ecological implications of enriched taxa that show an affinity for colonising plastic.

摘要

塑料污染现已在全球多个生态系统中被发现。对与海洋塑料相关的微生物组合体(即所谓的“塑料圈”)的特征描述主要集中在表生带的塑料上。目前尚未解决的问题是,这种群落是否包括与周围非塑料表面相比始终在塑料上富集的分类群,以及其生态影响。深海很可能是进入海洋的大部分塑料的最终归宿,但关于深海中塑料的微生物定植的信息有限。本研究的目的是调查与聚苯乙烯(PS)和聚氨酯(PU)相关的深海微生物群落,以巴斯石作为对照。将这些基质(n=15)部署在罗卡尔海槽(大西洋),并在 420 天后从 1796 米的深度回收。为了描述细菌群落,使用 Illumina MiSeq 平台对 16S rRNA 基因进行测序。一个主要的核心微生物组(在所有基质中共享的分类群)由总 ASV(扩增子序列变异)的 8%组成,占总群落读数的 92%。这表明许多常见的塑料圈报告成员只是机会主义者,它们可以自由地定植于任何硬表面。瞬时相关的物种约占总群落的 7%。30 个属在塑料上富集(P<0.05),占总群落的 1%。在 PS 上发现了新型深海富集分类群,包括 Aurantivirga、Algivirga、IheB3-7、Spirosoma、HTCC5015、Ekhidna 和 Calorithrix,在 PU 上发现了 Candidatus Obscuribacter、Haloferula、海洋甲基营养菌 3 组、Aliivibrio、Tibeticola 和 Dethiosulfatarculus。微生物组的这一小部分包括具有独特代谢能力的分类群,展示了细菌群落如何在深海中受到塑料污染的影响。本研究概述了一种新的方法来对塑料圈进行分类,以阐明对塑料具有亲和力的富集分类群的生态影响。

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