Transcriptomic and Metabolomic Responses in Cotton Plant to Infestation.

With the wide-scale adoption of transgenic (Bt) cotton, (Meyer-Dür) has become the most serious pest and has caused extensive yield loss in cotton production. However, little is known about the defense responses of cotton at the seedling stage to feeding. In this study, to elucidate the cotton defense mechanism, cotton leaves were damaged by for 0, 4, 12 and 24 h. The transcriptomic results showed that feeding elicits a rapid and strong defense response in gene expression during the whole infestation process in cotton plants. Further analysis revealed that at each assessment time, more differentially expressed genes were up-regulated than down-regulated. The integrated analysis of transcriptomic and metabolic data showed that most of the genes involved in jasmonic acid (JA) biosynthesis were initially up-regulated, and this trend continued during an infestation. Meanwhile, the content levels of JA and its intermediate products were also significantly increased throughout the whole infestation process. The similar trend was displayed in condensed tannins biosynthesis. This research proved that, after plants are damaged by , the JA pathway mediates the defense mechanisms in cotton plants by promoting the accumulation of condensed tannins as a defense mechanism against . These results will help us to discover unknown defensive genes and improve the integrated pest management of .