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两种近缘仓鼠物种——中国仓鼠()和条纹仓鼠()中的串联重复多样性

Tandem Repeat Diversity in Two Closely Related Hamster Species-The Chinese Hamster () and Striped Hamster ().

作者信息

Ivanova Nadezhda G, Kartavtseva Irina V, Stefanova Vera N, Ostromyshenskii Dmitrii I, Podgornaya Olga I

机构信息

Laboratory of Noncoding DNA, Institute of Cytology RAS, Saint Petersburg 194064, Russia.

Laboratory of Evolutionary Zoology, Federal Scientific Center of the East Asia Terrestrial Biodiversity, Vladivostok 690022, Russia.

出版信息

Biomedicines. 2022 Apr 18;10(4):925. doi: 10.3390/biomedicines10040925.

Abstract

The Chinese hamster () and striped hamster () are very closely related species with similar karyotypes. The karyotypes differ from each other by one Robertsonian rearrangement and X-chromosome morphology. The level of the tandem repeat (TR) sequences' evolutional variability is high. The aim of the current work was to trace the TR distribution on the chromosomes of two very closely related species. The striped hamster genome has not yet been sequenced. We classified the Chinese hamster TR in the assemblies available and then compared the mode of the TR distribution in closely related species. Chinese and striped hamsters are separate species due to the relative species specificity of Chinese hamster TR and prominent differences in the TR distribution in both species. The TR variation observed within homologous striped hamster chromosomes is caused by a lack of inbreeding in natural populations. The set of TR tested could be used to examine the CHO lines' instability that has been observed in heterochromatic regions.

摘要

中国仓鼠()和条纹仓鼠()是亲缘关系非常密切的物种,其核型相似。它们的核型因一次罗伯逊重排和X染色体形态而彼此不同。串联重复(TR)序列的进化变异性水平很高。当前这项工作的目的是追踪TR在两个亲缘关系非常密切的物种染色体上的分布情况。条纹仓鼠的基因组尚未测序。我们在可用的组装序列中对中国仓鼠的TR进行了分类,然后比较了亲缘关系密切的物种中TR的分布模式。由于中国仓鼠TR的相对物种特异性以及两个物种中TR分布的显著差异,中国仓鼠和条纹仓鼠是不同的物种。在同源条纹仓鼠染色体中观察到的TR变异是由自然种群中缺乏近亲繁殖导致的。所测试的TR集合可用于检测在异染色质区域观察到的中国仓鼠卵巢(CHO)细胞系的不稳定性。

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