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在不同非生物胁迫下,对糙皮侧耳中 WRKY 基因家族的全基因组鉴定和特征分析。

Genome-Wide Identification and Characterization of the WRKY Gene Family in Georgi under Diverse Abiotic Stress.

机构信息

Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, Shaanxi Normal University, Xi'an 710062, China.

出版信息

Int J Mol Sci. 2022 Apr 11;23(8):4225. doi: 10.3390/ijms23084225.

Abstract

The WRKY gene family is an important inducible regulatory factor in plants, which has been extensively studied in many model plants. It has progressively become the focus of investigation for the secondary metabolites of medicinal plants. Currently, there is no systematic analysis of the WRKY gene family in Georgi. For this study, a systematic and comprehensive bioinformatics analysis of the WRKY gene family was conducted based on the genomic data of . A total of 77 WRKY members were identified and 75 were mapped onto nine chromosomes, respectively. Their encoded WRKY proteins could be classified into three subfamilies: Group I, Group II (II-a, II-b, II-c, II-d, II-e), and Group III, based on the characteristics of the amino acid sequences of the WRKY domain and genetic structure. Syntenic analysis revealed that there were 35 pairs of repetitive fragments. Furthermore, the transcriptome data of roots, stems, leaves, and flowers showed that the spatial expression profiles of WRKYs were different. qRT-PCR analysis revealed that 11 stress-related WRKYs exhibited specific expression patterns under diverse treatments. In addition, sub cellular localization analysis indicated that and were localized in nucleus. This study is the first to report the identification and characterization of the WRKY gene family in , which is valuable for the further exploration of the biological function of SbWRKYs. It also provides valuable bioinformatics data for and provides a reference for assessing the medicinal properties of the genus.

摘要

WRKY 基因家族是植物中一种重要的诱导调节因子,在许多模式植物中得到了广泛研究。它已逐渐成为药用植物次生代谢产物研究的焦点。目前,尚未对Georgi 中的 WRKY 基因家族进行系统分析。在这项研究中,我们基于 的基因组数据,对 WRKY 基因家族进行了系统全面的生物信息学分析。共鉴定出 77 个 WRKY 成员,并将 75 个成员分别映射到 9 条染色体上。根据 WRKY 结构域氨基酸序列和遗传结构的特征,它们编码的 WRKY 蛋白可分为三个亚家族:I 组、II 组(II-a、II-b、II-c、II-d、II-e)和 III 组。共线性分析表明存在 35 对重复片段。此外,根、茎、叶和花的转录组数据表明 WRKYs 的空间表达谱存在差异。qRT-PCR 分析表明,11 个与应激相关的 WRKYs 在不同处理下表现出特定的表达模式。此外,亚细胞定位分析表明 SbWRKY12 和 SbWRKY13 定位于细胞核。本研究首次报道了 Georgi 中 WRKY 基因家族的鉴定和特征,这对于进一步探索 SbWRKYs 的生物学功能具有重要价值。它还为 提供了有价值的生物信息学数据,并为评估该属的药用特性提供了参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dbfd/9029115/5d19d0173721/ijms-23-04225-g001.jpg

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