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薇甘菊WRKY基因家族的全基因组鉴定与表达分析

Genome-wide identification and expression analysis of the WRKY gene family in Mikania micrantha.

作者信息

Zhang Zihan, Ji Mei, Ze Sangzi, Song Wenzheng, Yang Bin, Zhao Ning

机构信息

College of Biological Science and Food Engineering, Southwest Forestry University, Kunming, Yunnan Province, 650224, China.

Yunnan Academy of Forestry and Grassland, Kunming, Yunnan Province, 650201, China.

出版信息

BMC Genomics. 2025 Jan 3;26(1):2. doi: 10.1186/s12864-024-11187-0.

Abstract

BACKGROUND

WRKY transcription factors (TFs) regulate plant responses to environmental stimuli and development, including flowering. Despite extensive research on different species, their role in the invasive plant Mikania micrantha remains to be explored. The aim of this study was to identify and analyze WRKY genes in M. micrantha to understand their function in flowering and adaptation mechanisms.

RESULTS

By analysing the whole genome of M. micrantha, a total of 77 M. micrantha WRKY (MmWRKY) genes were identified. Based on phylogenetic relationships, sequence alignment, and structural domain diversity, the MmWRKY gene family was preliminarily classified into three major groups and five subgroups: Group I, Group II (II-a, II-b, II-c, II-d, II-e), and Group III. Expression profiles showed tissue-specific expression patterns, with many WRKY genes highly expressed in flowers, indicating potential roles in floral development. Real-time quantitative PCR confirmed that the selected 11 genes were highly expressed in floral tissues, supporting their functional significance in flowering.

CONCLUSION

In this study, 77 WRKY genes were identified in M micrantha, and their phylogenetic relationships, structural domains, and expression patterns across various tissues and organs were comprehensively analyzed. This work provides a foundation for future functional characterization of WRKY genes in M. micrantha, which may contribute to the development of more effective strategies to control its rapid spread.

摘要

背景

WRKY转录因子调控植物对环境刺激的反应以及包括开花在内的发育过程。尽管对不同物种进行了广泛研究,但它们在入侵植物薇甘菊中的作用仍有待探索。本研究的目的是鉴定和分析薇甘菊中的WRKY基因,以了解它们在开花和适应机制中的功能。

结果

通过分析薇甘菊的全基因组,共鉴定出77个薇甘菊WRKY(MmWRKY)基因。基于系统发育关系、序列比对和结构域多样性,MmWRKY基因家族初步分为三大组和五个亚组:第一组、第二组(II-a、II-b、II-c、II-d、II-e)和第三组。表达谱显示出组织特异性表达模式,许多WRKY基因在花中高度表达,表明它们在花发育中具有潜在作用。实时定量PCR证实所选的11个基因在花组织中高度表达,支持了它们在开花中的功能意义。

结论

本研究在薇甘菊中鉴定出77个WRKY基因,并对它们的系统发育关系、结构域以及在不同组织和器官中的表达模式进行了全面分析。这项工作为未来薇甘菊WRKY基因的功能表征奠定了基础,这可能有助于制定更有效的策略来控制其快速传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7db2/11697836/8b51aab0c06e/12864_2024_11187_Fig1_HTML.jpg

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