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标题:二金刚烷醇二聚体和一水合物中的氢键:色散修正密度泛函方法的检验案例。

Hydrogen Bonding in the Dimer and Monohydrate of 2-Adamantanol: A Test Case for Dispersion-Corrected Density Functional Methods.

机构信息

Departamento de Química Física y Química Inorgánica, Facultad de Ciencias-I.U. CINQUIMA, Universidad de Valladolid, Paseo de Belén, 7, 47011 Valladolid, Spain.

Dipartimento di Chimica ''Giacomo Ciamician'', Università di Bologna, Via Selmi, 2, 40126 Bologna, Italy.

出版信息

Molecules. 2022 Apr 17;27(8):2584. doi: 10.3390/molecules27082584.

DOI:10.3390/molecules27082584
PMID:35458782
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9030514/
Abstract

Weakly-bound intermolecular clusters constitute reductionist physical models for non-covalent interactions. Here we report the observation of the monomer, the dimer and the monohydrate of 2-adamantanol, a secondary alcohol with a bulky ten-carbon aliphatic skeleton. The molecular species were generated in a supersonic jet expansion and characterized using broadband chirped-pulse microwave spectroscopy in the 2-8 GHz frequency region. Two different - O-H···O hydrogen-bonded isomers were observed for the dimer of 2-adamantanol, while a single isomer was observed for the monomer and the monohydrate. The experimental rotational parameters were compared with molecular orbital calculations using density functional theory (B3LYP-D3(BJ), B2PLYP-D3(BJ), CAM-B3LYP-D3(BJ), ωB97XD), additionally providing energetic and electron density characterization. The shallow potential energy surface makes the dimer an interesting case study to benchmark dispersion-corrected computational methods and conformational search procedures.

摘要

弱束缚分子间簇合物构成非共价相互作用的简约物理模型。在这里,我们报告了金刚烷醇(一种带有庞大的十碳脂肪骨架的仲醇)的单体、二聚体和一水合物的观察结果。这些分子物种是在超音速射流膨胀中产生的,并在 2-8GHz 频率范围内使用宽带啁啾脉冲微波光谱进行了表征。对于金刚烷醇的二聚体,观察到了两种不同的-O-H···O 氢键异构形式,而对于单体和一水合物,仅观察到了一种异构形式。实验旋转参数与使用密度泛函理论(B3LYP-D3(BJ)、B2PLYP-D3(BJ)、CAM-B3LYP-D3(BJ)、ωB97XD)进行的分子轨道计算进行了比较,此外还提供了能量和电子密度特征。较浅的势能面使得二聚体成为一个有趣的案例研究,可以用于基准化分散校正计算方法和构象搜索程序。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/fcead1cf11e2/molecules-27-02584-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/e27388ac22ab/molecules-27-02584-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/322fe2af05a3/molecules-27-02584-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/09bd6a28ad97/molecules-27-02584-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/b0e56f88ce4a/molecules-27-02584-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/eec8c5adef78/molecules-27-02584-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/fcead1cf11e2/molecules-27-02584-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/e27388ac22ab/molecules-27-02584-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/322fe2af05a3/molecules-27-02584-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/09bd6a28ad97/molecules-27-02584-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/b0e56f88ce4a/molecules-27-02584-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/eec8c5adef78/molecules-27-02584-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a6/9030514/fcead1cf11e2/molecules-27-02584-g005.jpg

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