Gupta Siddharth, Kumar Ajay
Department of Biotechnology, Faculty of Engineering and Technology, Rama University, G.T. Road, Kanpur, 209217 India.
Int J Pept Res Ther. 2022;28(3):91. doi: 10.1007/s10989-022-10402-4. Epub 2022 Apr 18.
Dengue outbreaks are a serious public health concern that occurs on a regular basis in various locations of India. According to the Government of India's National Center for Vector-Borne Disease Control, a total of 1,23,106 dengue cases were identified in India as of October 2021. The currently available dengue vaccine was found to be ineffective against all serotypes of the virus. Dengue virus serotype 2 was reported to be the sole predominant serotype in Eastern Uttar Pradesh, India. An epitope-based peptide vaccine is believed to be safe and effective against all serotypes of the dengue virus. In this work, an epitope-based peptide vaccine based on envelope protein against the dengue virus was developed using the reverse vaccinology method. T-cell epitopes present in the envelope protein were screened using different immunoinformatic tools. Epitopes predicted by all servers were chosen and additionally picked out on the grounds of their antigenic reactivity, immunogenicity, toxicity, and allergenicity assessment. Three potent T cell epitopes as IVQPENLEY, ILIGVVITW, and DTAWDFGSL were screened, which binds with HLA-B35:01, HLA-B58:01, HLA-A*26:01 alleles, respectively. To build a 3D structure model of epitopes and alleles, the PepstrMod and Swiss-Model servers were used. Predicted epitopes and HLA alleles were docked using the HPEPDOCK server to confirm binding ability. These anticipated epitopes were found to cover the greatest number of populations in India and around the world. These identified epitopes have a high potential for eliciting an immune response in the development of a vaccine against the dengue virus, while further experimental validation is required for final confirmation.
The online version contains supplementary material available at 10.1007/s10989-022-10402-4.
登革热疫情是印度各地经常发生的严重公共卫生问题。根据印度政府的国家媒介传播疾病控制中心的数据,截至2021年10月,印度共确诊123106例登革热病例。目前可用的登革热疫苗被发现对该病毒的所有血清型均无效。据报道,登革热病毒血清型2是印度北方邦东部唯一的主要血清型。基于表位的肽疫苗被认为对登革热病毒的所有血清型均安全有效。在这项工作中,采用反向疫苗学方法开发了一种基于包膜蛋白的抗登革热病毒表位肽疫苗。使用不同的免疫信息学工具筛选包膜蛋白中存在的T细胞表位。选择所有服务器预测的表位,并根据其抗原反应性、免疫原性、毒性和致敏性评估另外挑选。筛选出三个有效的T细胞表位,即IVQPENLEY、ILIGVVITW和DTAWDFGSL,它们分别与HLA - B35:01、HLA - B58:01、HLA - A*26:01等位基因结合。为了构建表位和等位基因的三维结构模型,使用了PepstrMod和Swiss - Model服务器。使用HPEPDOCK服务器对接预测的表位和HLA等位基因以确认结合能力。这些预期的表位被发现覆盖了印度和世界各地最多的人群。这些鉴定出的表位在开发抗登革热病毒疫苗中具有引发免疫反应的高潜力,不过最终确认还需要进一步的实验验证。
在线版本包含可在10.1007/s10989 - 022 - 10402 - 4获取的补充材料。