Sofi-Mahmudi Ahmad, Raittio Eero
Seqiz Health Network, Kurdistan University of Medical Sciences, Sanandaj, Iran.
Cochrane Iran Associate Centre, National Institute for Medical Research Development, Tehran, Iran.
Front Oral Health. 2022 Apr 6;3:871033. doi: 10.3389/froh.2022.871033. eCollection 2022.
We aimed to assess the adherence to transparency practices (data availability, code availability, statements of protocol registration and conflicts of interest and funding disclosures) and FAIRness (Findable, Accessible, Interoperable, and Reusable) of shared data from open access COVID-19-related articles published in dental journals available from the Europe PubMed Central (PMC) database.
We searched and exported all COVID-19-related open-access articles from PubMed-indexed dental journals available in the Europe PMC database in 2020 and 2021. We detected transparency indicators with a validated and automated tool developed to extract the indicators from the downloaded articles. Basic journal- and article-related information was retrieved from the PMC database. Then, from those which had shared data, we assessed their accordance with FAIR data principles using the F-UJI online tool (f-uji.net).
Of 650 available articles published in 59 dental journals, 74% provided conflicts of interest disclosure and 40% funding disclosure and 4% were preregistered. One study shared raw data (0.15%) and no study shared code. Transparent practices were more common in articles published in journals with higher impact factors, and in 2020 than in 2021. Adherence to the FAIR principles in the only paper that shared data was moderate.
While the majority of the papers had a COI disclosure, the prevalence of the other transparency practices was far from the acceptable level. A much stronger commitment to open science practices, particularly to preregistration, data and code sharing, is needed from all stakeholders.
我们旨在评估欧洲生物医学文献数据库(Europe PubMed Central,PMC)中牙科期刊发表的开放获取的与 COVID-19 相关文章所共享数据的透明度实践(数据可用性、代码可用性、方案注册声明、利益冲突声明和资金披露)以及 FAIR 性(可查找、可访问、可互操作和可重用)。
我们检索并导出了 2020 年和 2021 年欧洲 PMC 数据库中可获取的、被 PubMed 索引的牙科期刊上所有与 COVID-19 相关的开放获取文章。我们使用一个经过验证的自动化工具来检测透明度指标,该工具用于从下载的文章中提取指标。从 PMC 数据库中检索基本的期刊和文章相关信息。然后,对于那些共享了数据的文章,我们使用 F-UJI 在线工具(f-uji.net)评估其是否符合 FAIR 数据原则。
在 59 种牙科期刊发表的 650 篇可用文章中,74%提供了利益冲突披露,40%提供了资金披露,4%进行了预注册。一项研究共享了原始数据(0.15%),没有研究共享代码。透明度实践在影响因子较高的期刊发表的文章中更为常见,且在 2020 年比 2021 年更常见。在唯一一篇共享数据的论文中,对 FAIR 原则的遵守程度一般。
虽然大多数论文都有利益冲突披露,但其他透明度实践的普及率远未达到可接受水平。所有利益相关者都需要对开放科学实践,特别是对预注册、数据和代码共享,做出更坚定的承诺。