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通过分子对接和分子动力学模拟方法将扁平苔藓药物重新用作潜在的抗COVID-19治疗药物。

Lichen planus drugs re-purposing as potential anti COVID-19 therapeutics through molecular docking and molecular dynamics simulation approach.

作者信息

Soni Unnati, Singh Pratyush, Gupta Om Prakash, Gupta Shalini, Singh Saurabh Pratap, Singh Prerna, Singh Sangeeta, Mishra Krishna

机构信息

Department of Applied Sciences, Indian Institute of Information Technology, Allahabad, Uttar Pradesh, India.

Department of Oral Pathology and Microbiology, MaharanaPratap Dental College, Kanpur, Uttar Pradesh, India.

出版信息

J Clin Transl Res. 2022 Mar 1;8(2):127-146. eCollection 2022 Apr 29.

Abstract

BACKGROUND AND AIM

The present study intends to investigate COVID-19 by targeting their main proteins with 17 selected drugs used for treating Oral Lichen Planus (OLP) which is a chronic muco-cutaneous disorder. Here, an attempt is made to gain better insight into the structure of various drugs targeting specific proteins which will be helpful in developing drugs useful for therapeutic and preventive measures.

METHOD

studies, molecular docking and molecular dynamic simulations were performed to repurpose the therapeutic drugs (n = 17) which were used to treat OLP against COVID-19. In addition, the maximum binding affinities of the key protein spike glycoprotein, main-protease (M) of coronavirus, and Angiotensin-Converting Enzyme-2 (ACE-2) in the human body were evaluated with the selected drugs.

RESULTS

Epigallocatechin-3-gallate (EGCG) showed the highest docking values among the drugs selected for repurposing. Among the target proteins, EGCG has shown maximum binding affinity with ACE-2 receptor. Further, according to the molecular dynamic simulation studies, EGCG has shown the least conformational fluctuations with M.

CONCLUSION

EGCG can be a potential inhibitor drug which can bind with ACE-2 receptor thus inhibiting the interaction of mainly M protein and spike glycoprotein of SARS-CoV-2.

RELEVANCE FOR PATIENTS

EGCG, a natural compound shows antiviral potential having considerably high affinity and stability with SARS-CoV-2. It might be further employed as a lead drug against selective inhibitors of SARS-CoV-2 for the therapeutic management of COVID-19 patients after necessary clinical trials.

摘要

背景与目的

本研究旨在通过使用17种用于治疗口腔扁平苔藓(OLP,一种慢性黏膜皮肤疾病)的选定药物靶向新冠病毒的主要蛋白质来研究新冠病毒。在此,试图更深入地了解靶向特定蛋白质的各种药物的结构,这将有助于开发用于治疗和预防措施的药物。

方法

进行了研究、分子对接和分子动力学模拟,以重新利用用于治疗OLP的治疗药物(n = 17)来对抗新冠病毒。此外,还评估了选定药物对人体关键蛋白刺突糖蛋白、冠状病毒的主要蛋白酶(M)和血管紧张素转换酶2(ACE-2)的最大结合亲和力。

结果

表没食子儿茶素-3-没食子酸酯(EGCG)在选定用于重新利用的药物中显示出最高的对接值。在靶蛋白中,EGCG与ACE-2受体显示出最大的结合亲和力。此外,根据分子动力学模拟研究,EGCG与M的构象波动最小。

结论

EGCG可能是一种潜在的抑制剂药物,它可以与ACE-2受体结合,从而抑制严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的主要M蛋白和刺突糖蛋白的相互作用。

对患者的意义

EGCG是一种天然化合物,显示出抗病毒潜力,与SARS-CoV-2具有相当高的亲和力和稳定性。在进行必要的临床试验后,它可能进一步用作针对SARS-CoV-2选择性抑制剂的先导药物,用于新冠病毒患者的治疗管理。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5fe/9036082/48f79df1116d/jclintranslres-2022-8-2-127-g001.jpg

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