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通过流式细胞术估算不同天竺葵属物种的核 DNA 含量的变异性。

The variability of nuclear DNA content of different Pelargonium species estimated by flow cytometry.

机构信息

Julius Kühn Institute (JKI)-Federal Research Centre of Cultivated Plants, Institute for Breeding Research on Horticultural Crops, Quedlinburg, Germany.

出版信息

PLoS One. 2022 Apr 28;17(4):e0267496. doi: 10.1371/journal.pone.0267496. eCollection 2022.

Abstract

Pelargonium is a versatile genus mainly from the Cape Region, South Africa. The genus is divided into four subgenera and 16 sections characterized by several groups of chromosomes sizes and numbers. The DNA content of species from all subgenera and sections of Pelargonium, except for the sections Subsucculentia and Campylia was estimated using flow cytometry. Nuclei of Pelargonium samples (leaf or petal tissue) and an internal plant standard (leaf tissue) were isolated together and stained with propidium iodide. The DNA content was estimated providing that the 2C peaks of sample and standard be in linearity in the flow cytometer histograms. In total, 96 Pelargonium accessions of 60 species (22 Pelargonium species for the first time) were analyzed. The 2C DNA content ranged from 0.84 pg (P. longifolium, section Hoarea) to 6.69 pg (P. schizopetalum, section Magnistipulacea) and the corresponding 1Cx DNA content from 0.42 pg (P. longifolium) to 1.72 pg (P. transvaalense. This demonstrates the high plasticity within the genus Pelargonium. Some species, such as P. peltatum accessions revealed a pronounced endopolyploidization in leaves but not in petals underlining the importance to choose the right tissue as sample for the flow cytometry analysis. The reported genome sizes are a step forward towards the characterization of the Pelargonium collection within the German Gene Bank for Ornamental Plants and a valuable base for future sequencing programs of the Pelargonium genomes.

摘要

天竺葵属是一个多用途的属,主要来自南非开普地区。该属分为四个亚属和 16 个节,其特征是染色体大小和数量的几组。除了 Subsucculentia 和 Campylia 两个节外,使用流式细胞术估计了来自所有亚属和天竺葵属节的物种的 DNA 含量。天竺葵样品(叶片或花瓣组织)和内部植物标准(叶片组织)的细胞核一起分离并用碘化丙啶染色。提供样品和标准的 2C 峰在流式细胞仪直方图中呈线性关系,即可估计 DNA 含量。总共分析了 96 个天竺葵属 60 种的标本(其中 22 种为首次)。2C DNA 含量范围从 0.84pg(Hoarea 节的 P. longifolium)到 6.69pg(Magnistipulacea 节的 P. schizopetalum),相应的 1Cx DNA 含量范围从 0.42pg(P. longifolium)到 1.72pg(P. transvaalense)。这表明天竺葵属内具有很高的可塑性。一些物种,如 P. peltatum 标本,在叶片中表现出明显的内多倍化,但在花瓣中没有,这强调了选择正确组织作为流式细胞术分析样品的重要性。所报道的基因组大小是朝着德国观赏植物基因库中对天竺葵属进行特征描述迈出的一步,也是未来对天竺葵属基因组进行测序计划的宝贵基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2602/9049363/07f106a538db/pone.0267496.g001.jpg

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