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2016 年至 2018 年中国 G3P[8]组轮状病毒株的基因组和进化特征。

Genomic and evolutionary characteristics of G3P[8] group a rotavirus strains in China, 2016 to 2018.

机构信息

National Institute for Viral Diseases Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China.

National Institute for Viral Diseases Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China.

出版信息

Infect Genet Evol. 2022 Jul;101:105287. doi: 10.1016/j.meegid.2022.105287. Epub 2022 Apr 26.

Abstract

Rotavirus A (RVA) G3P[8] is sporadically detected in China, although G9P[8] predominates. To evaluate their genetic composition at the whole-genome level, 24 G3P[8] RVA strains isolated from children under five years were sequenced and characterized. The 24 strains were genotyped as G3-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1, indicating the Wa-like genotype constellation. A maximum clade credibility (MCC) tree for VP7 indicated that G3 had an estimated mean evolutionary rate of 7.279 × 10 substitutions/site/year; thus, 3-5 years would pass from the generation of an ancestor virus to the epidemic spread of that virus throughout China. Considering the ongoing prevalence as well as rapid evolution, it is important to monitor G3P[8] RVA epidemics; continuous nationwide surveillance is essential.

摘要

轮状病毒 A(RVA)G3P[8]在中国偶有检出,但以 G9P[8]为主。为评估其全基因组水平的遗传组成,对 24 株来自 5 岁以下儿童的 G3P[8]RVA 分离株进行了测序和特征分析。24 株病毒的基因型为 G3-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1,提示 Wa 样基因型构成。VP7 的最大简约可信度(MCC)树表明,G3 的估计平均进化率为 7.279×10 个替换/位点/年;因此,从祖先病毒的产生到该病毒在中国的流行传播需要 3-5 年时间。鉴于其持续流行和快速进化,监测 G3P[8]RVA 流行情况非常重要;持续的全国性监测至关重要。

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