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RNA 测序揭示了先前未解决的林奇综合征家族中具有临床可操作性的种系内含子变异。

RNA sequencing uncovers clinically actionable germline intronic variants in previously unresolved Lynch syndrome families.

机构信息

Ambry Genetics Corp, Aliso Viejo, California, USA

Inova Primary Care, Falls Church, Virginia, USA.

出版信息

BMJ Case Rep. 2022 Apr 29;15(4):e249580. doi: 10.1136/bcr-2022-249580.

DOI:10.1136/bcr-2022-249580
PMID:35487642
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9058703/
Abstract

Despite advances in genetic testing for Lynch syndrome, nearly one quarter of mismatch repair-deficient (MMRd) colorectal and endometrial cancers remain unexplained. When added to germline DNA testing, RNA sequencing can increase diagnostic yield, improve variant classification and reduce variants of uncertain significance. Here, we describe two cases where RNA sequencing uncovered likely pathogenic variants in families with MMRd tumours that were initially unexplained following comprehensive genetic testing for Lynch syndrome.

摘要

尽管在林奇综合征的基因检测方面取得了进展,但近四分之一的错配修复缺陷(MMRd)结直肠癌和子宫内膜癌仍然无法解释。当与种系 DNA 检测联合使用时,RNA 测序可以提高诊断产量,改善变异分类,并减少意义不明的变异。在这里,我们描述了两个案例,在对林奇综合征进行全面基因检测后最初无法解释的 MMRd 肿瘤家族中,RNA 测序发现了可能的致病性变异。

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本文引用的文献

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Double somatic mismatch repair gene pathogenic variants as common as Lynch syndrome among endometrial cancer patients.子宫内膜癌患者中双体种系错配修复基因突变与林奇综合征一样常见。
Gynecol Oncol. 2021 Jan;160(1):161-168. doi: 10.1016/j.ygyno.2020.10.012. Epub 2020 Oct 21.
2
The Clinical Application of RNA Sequencing in Genetic Diagnosis of Mendelian Disorders.RNA测序在孟德尔疾病基因诊断中的临床应用
Clin Lab Med. 2020 Jun;40(2):121-133. doi: 10.1016/j.cll.2020.02.004.
3
Splicing profile by capture RNA-seq identifies pathogenic germline variants in tumor suppressor genes.通过捕获RNA测序得到的剪接图谱可识别肿瘤抑制基因中的致病性种系变异。
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JAMA Netw Open. 2019 Oct 2;2(10):e1913900. doi: 10.1001/jamanetworkopen.2019.13900.
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Clinical characteristics of patients with colorectal cancer with double somatic mismatch repair mutations compared with Lynch syndrome.与林奇综合征相比,具有双重体细胞错配修复突变的结直肠癌患者的临床特征。
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RNA Analysis Identifies Pathogenic Duplications in MSH2 in Patients With Lynch Syndrome.RNA分析鉴定林奇综合征患者MSH2基因的致病性重复。
Gastroenterology. 2019 May;156(6):1924-1925.e4. doi: 10.1053/j.gastro.2019.01.248. Epub 2019 Jan 30.
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Comprehensive Paired Tumor/Germline Testing for Lynch Syndrome: Bringing Resolution to the Diagnostic Process.全面的肿瘤/胚系配对检测用于林奇综合征:解决诊断过程中的问题。
J Clin Oncol. 2019 Mar 10;37(8):647-657. doi: 10.1200/JCO.18.00696. Epub 2019 Jan 31.
8
Quantitative Analysis of and Germline Splicing Variants Using a Novel RNA-Massively Parallel Sequencing Assay.使用新型RNA大规模平行测序分析对生殖系剪接变体进行定量分析。
Front Oncol. 2018 Jul 27;8:286. doi: 10.3389/fonc.2018.00286. eCollection 2018.
9
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.序列变异解读的标准与指南:美国医学遗传学与基因组学学会和分子病理学协会的联合共识推荐
Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.
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