State Key Laboratory of Southwestern Chinese Medicine Resources, School of Basic Medical Sciences, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Faculty of Medicine, Macau University of Science and Technology, Macau, China.
Front Immunol. 2022 Apr 12;13:862527. doi: 10.3389/fimmu.2022.862527. eCollection 2022.
Hepatocellular carcinoma (HCC) is the predominant subtype of primary liver cancer and represents a highly heterogeneous disease, making it hard to predict the prognosis and therapy efficacy. Here, we established a novel tumor immunological phenotype-related gene index (TIPRGPI) consisting of 11 genes by Univariate Cox regression and the least absolute shrinkage and selection operator (LASSO) algorithm to predict HCC prognosis and immunotherapy response. TIPRGPI was validated in multiple datasets and exhibited outstanding performance in predicting the overall survival of HCC. Multivariate analysis verified it as an independent predictor and a TIPRGPI-integrated nomogram was constructed to provide a quantitative tool for clinical practice. Distinct mutation profiles, hallmark pathways, and infiltration of immune cells in tumor microenvironment were shown between the TIPRGPI high and low-risk groups. Notably, significant differences in tumor immunogenicity and tumor immune dysfunction and exclusion (TIDE) were observed between the two risk groups, suggesting a better response to immune checkpoint blockade (ICB) therapy of the low-risk group. Besides, six potential drugs binding to the core target of the TIPRGPI signature were predicted molecular docking. Taken together, our study shows that the proposed TIPRGPI was a reliable signature to predict the risk classification, immunotherapy response, and drugs candidate with potential application in the clinical decision and treatment of HCC. The novel "TIP genes"-guided strategy for predicting the survival and immunotherapy efficacy, we reported here, might be also applied to more cancers other than HCC.
肝细胞癌(HCC)是原发性肝癌的主要亚型,是一种高度异质性的疾病,难以预测预后和治疗效果。在这里,我们通过单因素 Cox 回归和最小绝对收缩和选择算子(LASSO)算法建立了一个由 11 个基因组成的新型肿瘤免疫表型相关基因指数(TIPRGPI),用于预测 HCC 的预后和免疫治疗反应。TIPRGPI 在多个数据集进行了验证,并在预测 HCC 的总生存期方面表现出优异的性能。多变量分析验证了它是一个独立的预测因子,并构建了 TIPRGPI 整合的列线图,为临床实践提供了一种定量工具。两组之间显示出不同的突变谱、标志性通路和肿瘤微环境中免疫细胞的浸润。值得注意的是,两组之间的肿瘤免疫原性和肿瘤免疫功能障碍和排除(TIDE)存在显著差异,提示低风险组对免疫检查点阻断(ICB)治疗的反应更好。此外,还预测了与 TIPRGPI 特征核心靶标结合的六种潜在药物进行分子对接。综上所述,我们的研究表明,所提出的 TIPRGPI 是一种可靠的预测风险分类、免疫治疗反应和候选药物的标志物,具有在 HCC 的临床决策和治疗中潜在应用的价值。我们在这里报道的新型“TIP 基因”指导的生存和免疫治疗效果预测策略,可能也适用于除 HCC 以外的更多癌症。