Department of Biochemistry, Brandeis University, Waltham, Massachusetts 02453, United States.
Biochemistry. 2022 Jun 7;61(11):956-962. doi: 10.1021/acs.biochem.2c00163. Epub 2022 May 4.
Proteins of the HD-domain superfamily employ a conserved histidine-aspartate (HD) dyad to coordinate diverse metallocofactors. While most known HD-domain proteins are phosphohydrolases, new additions to this superfamily have emerged such as oxygenases and lyases, expanding their functional repertoire. To date, three HD-domain oxygenases have been identified, all of which employ a mixed-valent FeFe cofactor to activate their substrates and utilize molecular oxygen to afford cleavage of C-C or C-P bonds via a diferric superoxo intermediate. Phylogenetic analysis reveals an uncharacterized multidomain protein in the pathogenic soil fungus , herein designated PhoF. PhoF consists of an N-terminal Fe/α-ketoglutarate-dependent domain resembling that of PhnY and a C-terminal HD-domain like that of PhnZ. PhnY and PhnZ are part of an organophosphonate degradation pathway in which PhnY hydroxylates 2-aminoethylphosphonic acid, and PhnZ cleaves the C-P bond of the hydroxylated product yielding phosphate and glycine. Employing electron paramagnetic resonance and Mössbauer spectroscopies in tandem with activity assays, we determined that PhoF carries out the O-dependent degradation of two aminophosphonates, demonstrating an expanded catalytic efficiency with respect to the individual, but mechanistically coupled PhnY and PhnZ. Our results recognize PhoF as a new example of an HD-domain oxygenase and show that domain fusion of an organophosphonate degradation pathway may be a strategy for disease-causing fungi to acquire increased functional versatility, potentially important for their survival.
HD 结构域超家族的蛋白质利用保守的组氨酸-天冬氨酸 (HD) 二联体来协调多种金属辅因子。虽然大多数已知的 HD 结构域蛋白是磷酸水解酶,但这个超家族的新成员不断涌现,如加氧酶和裂解酶,扩展了它们的功能范围。迄今为止,已经鉴定出三种 HD 结构域加氧酶,它们都利用混合价态的 FeFe 辅因子来激活其底物,并利用分子氧通过双铁过氧中间物实现 C-C 或 C-P 键的断裂。系统发育分析揭示了致病性土壤真菌中一种未表征的多结构域蛋白,在此命名为 PhoF。PhoF 由一个 N 端 Fe/α-酮戊二酸依赖性结构域和一个 C 端 HD 结构域组成,类似于 PhnY 和 PhnZ。PhnY 和 PhnZ 是有机膦酸盐降解途径的一部分,其中 PhnY 羟基化 2-氨基乙基膦酸,而 PhnZ 则裂解羟化产物的 C-P 键,生成磷酸盐和甘氨酸。通过电子顺磁共振和穆斯堡尔谱学与活性测定相结合,我们确定 PhoF 进行两种氨基膦酸盐的 O 依赖性降解,表现出相对于单个但机械偶联的 PhnY 和 PhnZ 更高的催化效率。我们的结果将 PhoF 识别为 HD 结构域加氧酶的新范例,并表明有机膦酸盐降解途径的结构域融合可能是致病真菌获得增加功能多样性的一种策略,这对它们的生存可能很重要。