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实验与理论研究细胞色素 P450 脱羧酶 OleT 中的动力学同位素效应

Experimental and Theoretical Examination of the Kinetic Isotope Effect in Cytochrome P450 Decarboxylase OleT.

机构信息

Department of Chemistry & Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States.

Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.

出版信息

J Phys Chem B. 2022 May 19;126(19):3493-3504. doi: 10.1021/acs.jpcb.1c10280. Epub 2022 May 4.

DOI:10.1021/acs.jpcb.1c10280
PMID:35508080
Abstract

Using a combination of experimental studies, theory, simulation, and modeling, we investigate the hydrogen atom transfer (HAT) reaction by the high-valent ferryl cytochrome P450 (CYP) intermediate known as Compound I, a species that is central to innumerable and important detoxification and biosynthetic reactions. The P450 decarboxylase known as OleT converts fatty acids, a sustainable biological feedstock, into terminal alkenes and thus is of high interest as a potential means to produce fungible biofuels. Previous experimental work has established the intermediacy of Compound I in the C─C scission reaction catalyzed by OleT and an unprecedented ability to monitor the HAT process in the presence of bound fatty acid substrates. Here, we leverage the kinetic simplicity of the OleT system to measure the activation barriers for CYP HAT and the temperature dependence of the substrate H kinetic isotope effect. Notably, neither measurement has been previously accessible for a CYP to date. Theoretical analysis alludes to the significance of substrate fatty acid coordination for generating the hydrogen donor/acceptor configurations that are most conducive for HAT to occur. The analysis of the two-dimensional potential energy surface, based on multireference electronic wave functions, illustrates the uncoupled character of the hydrogen motion. Quantum dynamics calculations along the hydrogen reaction path demonstrate that hydrogen tunneling is essential to qualitatively capture the experimental isotope effect, its temperature dependence, and appropriate activation energies. Overall, a more fundamental understanding of the OleT reaction coordinate contributes to the development of biomimetic catalysts for controlled C─H bond activation, an outstanding current challenge for (bio)synthetic chemistry.

摘要

我们结合实验研究、理论、模拟和建模,研究了高价铁氧还蛋白细胞色素 P450(CYP)中间体Compound I 引发的氢原子转移(HAT)反应,这种中间体是无数重要解毒和生物合成反应的核心。P450 脱羧酶 OleT 将脂肪酸(一种可持续的生物原料)转化为末端烯烃,因此作为生产可替代生物燃料的潜在手段具有很高的研究价值。先前的实验工作已经确定了 Compound I 在 OleT 催化的 C─C 断裂反应中的中间体地位,以及在存在结合脂肪酸底物的情况下监测 HAT 过程的前所未有的能力。在这里,我们利用 OleT 系统的动力学简单性来测量 CYP HAT 的活化势垒和底物 H 的动力学同位素效应的温度依赖性。值得注意的是,迄今为止,对于 CYP 来说,这两种测量都无法实现。理论分析暗示了底物脂肪酸配位对于产生最有利于 HAT 发生的氢供体/受体构型的重要性。基于多参考电子波函数的二维势能面分析说明了氢运动的非耦合性质。沿着氢反应路径的量子动力学计算表明,氢隧穿对于定性捕捉实验同位素效应、其温度依赖性和适当的活化能至关重要。总的来说,对 OleT 反应坐标的更深入理解有助于开发用于控制 C─H 键活化的仿生催化剂,这是(生物)合成化学中的一个突出挑战。

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Experimental and Theoretical Examination of the Kinetic Isotope Effect in Cytochrome P450 Decarboxylase OleT.实验与理论研究细胞色素 P450 脱羧酶 OleT 中的动力学同位素效应
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