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成纤维细胞和纤维化中的表观转录组学。

Epitranscriptomics in fibroblasts and fibrosis.

机构信息

Center for RNA Medicine, Department of Clinical Medicine, Aalborg University, Copenhagen, Denmark.

出版信息

Am J Physiol Cell Physiol. 2022 Jun 1;322(6):C1110-C1116. doi: 10.1152/ajpcell.00121.2022. Epub 2022 May 4.

Abstract

Fibroblasts play an important role in the pathogenic mechanisms of several socially significant diseases, including pulmonary and cardiovascular fibrosis, liver cirrhosis, systemic sclerosis, progressive kidney disease. The alterations of the epitranscriptome, including more than 170 distinct posttranscriptional RNA modifications or editing events, justified their investigation as an important modulator of fibrosis. Recent development of high-throughput methods allows the identification of RNA modification sites and their mechanistic aspect in the fibrosis development. The most common RNA modification is methylation of N-adenosine deposited by the mA methyltransferase complex (METTL3/14/16, WTAP, KIAA1429, and RBM15/15B), erased by demethylases (FTO and ALKBH5), and recognized by binding proteins (e.g., YTHDF1/2/3, YTHDC1/2, IGF2BP1/2/3, etc.). Adenosine to inosine (A-to-I) RNA editing is another abundant editing event converting adenosine to inosine in double-stranded RNA regions through the action of the adenosine deaminase (ADAR) proteins. Last but not least, 5-methylcytosine (mC) regulates the stability and translation of mRNAs. All those RNA modifications have been observed in mRNA as well as the noncoding regions of pre-mRNA and noncoding RNAs (ncRNAs) and demonstrated to be involved in fibrosis in different cellular and animal models. This Mini-Review focuses on the latest research on epitranscriptomic marks related to fibroblast biology and fibrosis as well as elucidates the future research directions in this context.

摘要

成纤维细胞在几种具有社会重要性的疾病的发病机制中起着重要作用,包括肺和心血管纤维化、肝硬化、系统性硬化症、进行性肾病。表转录组的改变,包括 170 多种不同的转录后 RNA 修饰或编辑事件,证明了它们作为纤维化重要调节剂的研究价值。高通量方法的最新发展允许鉴定 RNA 修饰位点及其在纤维化发展中的机制方面。最常见的 RNA 修饰是 N-腺苷的甲基化,由 mA 甲基转移酶复合物(METTL3/14/16、WTAP、KIAA1429 和 RBM15/15B)沉积,由去甲基酶(FTO 和 ALKBH5)去除,并由结合蛋白识别(例如,YTHDF1/2/3、YTHDC1/2、IGF2BP1/2/3 等)。腺苷到肌苷(A-to-I)RNA 编辑是另一种丰富的编辑事件,通过腺苷脱氨酶(ADAR)蛋白的作用将腺苷转化为双链 RNA 区域中的肌苷。最后但同样重要的是,5-甲基胞嘧啶(mC)调节 mRNA 的稳定性和翻译。所有这些 RNA 修饰都在 mRNA 以及前体 mRNA 和非编码 RNA(ncRNA)的非编码区域中观察到,并证明在不同的细胞和动物模型中参与纤维化。这篇迷你综述重点介绍了与成纤维细胞生物学和纤维化相关的表转录组标记的最新研究,并阐明了这方面的未来研究方向。

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