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高复杂性移码新抗原肽微阵列的制备。

Production of high-complexity frameshift neoantigen peptide microarrays.

作者信息

Shen Luhui, Zhao Zhan-Gong, Lainson John C, Brown Justin R, Sykes Kathryn F, Johnston Stephen Albert, Diehnelt Chris W

机构信息

Center for Innovations in Medicine, Biodesign Institute, Arizona State University Tempe AZ USA

Calviri, Inc. Tempe AZ USA.

出版信息

RSC Adv. 2020 Aug 11;10(50):29675-29681. doi: 10.1039/d0ra05267a. eCollection 2020 Aug 10.

DOI:10.1039/d0ra05267a
PMID:35518269
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9056171/
Abstract

Parallel measurement of large numbers of antigen-antibody interactions are increasingly enabled by peptide microarray technologies. Our group has developed an synthesized peptide microarray of >400 000 frameshift neoantigens using mask-based photolithographic peptide synthesis, to profile patient specific neoantigen reactive antibodies in a single assay. The system produces 208 replicate mircoarrays per wafer and is capable of producing multiple wafers per synthetic lot to routinely synthesize over 300 million peptides simultaneously. In this report, we demonstrate the feasibility of the system for detecting peripheral-blood antibody binding to frameshift neoantigens across multiple synthetic lots.

摘要

肽微阵列技术越来越能够实现大量抗原-抗体相互作用的并行测量。我们的团队利用基于掩膜的光刻肽合成技术,开发了一种包含超过40万个移码新抗原的合成肽微阵列,以便在一次检测中分析患者特异性新抗原反应性抗体。该系统每个晶片可生产208个重复微阵列,并且每个合成批次能够生产多个晶片,从而能够同时常规合成超过3亿个肽。在本报告中,我们证明了该系统在多个合成批次中检测外周血抗体与移码新抗原结合的可行性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/c1fe321f0aa2/d0ra05267a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/a6b9ff043afb/d0ra05267a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/c1427927cd38/d0ra05267a-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/ee72fb0da927/d0ra05267a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/24252115672f/d0ra05267a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/c1fe321f0aa2/d0ra05267a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/a6b9ff043afb/d0ra05267a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/c1427927cd38/d0ra05267a-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/ee72fb0da927/d0ra05267a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/24252115672f/d0ra05267a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7ec/9056171/c1fe321f0aa2/d0ra05267a-f5.jpg

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本文引用的文献

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Eng Life Sci. 2017 Jul 20;17(10):1078-1087. doi: 10.1002/elsc.201700062. eCollection 2017 Oct.
2
HLA Class II Specificity Assessed by High-Density Peptide Microarray Interactions.高密度肽微阵列相互作用评估的 HLA II 类特异性。
J Immunol. 2020 Jul 1;205(1):290-299. doi: 10.4049/jimmunol.2000224. Epub 2020 Jun 1.
3
Comparison of personal and shared frameshift neoantigen vaccines in a mouse mammary cancer model.
比较个人和共享移码 neoantigen 疫苗在小鼠乳腺肿瘤模型中的作用。
BMC Immunol. 2020 May 5;21(1):25. doi: 10.1186/s12865-020-00350-3.
4
B cells, plasma cells and antibody repertoires in the tumour microenvironment.肿瘤微环境中的 B 细胞、浆细胞和抗体库。
Nat Rev Immunol. 2020 May;20(5):294-307. doi: 10.1038/s41577-019-0257-x. Epub 2020 Jan 27.
5
RNA Transcription and Splicing Errors as a Source of Cancer Frameshift Neoantigens for Vaccines.RNA 转录和剪接错误作为癌症移码新抗原疫苗的来源。
Sci Rep. 2019 Oct 2;9(1):14184. doi: 10.1038/s41598-019-50738-4.
6
Towards precision medicine: the role and potential of protein and peptide microarrays.迈向精准医学:蛋白质和肽微阵列的作用和潜力。
Analyst. 2019 Sep 9;144(18):5353-5367. doi: 10.1039/c9an01142k.
7
Miniaturized and Automated Synthesis of Biomolecules-Overview and Perspectives.生物分子的小型化和自动化合成 - 概述与展望。
Adv Mater. 2019 Jun;31(26):e1806656. doi: 10.1002/adma.201806656. Epub 2019 Apr 29.
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Improved methods for the detection of histone interactions with peptide microarrays.改进的组蛋白与肽微阵列相互作用的检测方法。
Sci Rep. 2019 Apr 18;9(1):6265. doi: 10.1038/s41598-019-42711-y.
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