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通过密度泛函理论(DFT)和二阶微扰理论(MP2)计算对单取代和双取代五元环的构象空间进行详尽探索。

Exhaustive exploration of the conformational landscape of mono- and disubstituted five-membered rings by DFT and MP2 calculations.

作者信息

Stortz Carlos A, Sarotti Ariel M

机构信息

Universidad de Buenos Aires, Facultad de Ciencias Exactas, Departamento de Química Orgánica, Centro de Investigaciones en Hidratos de Carbono (CIHIDECAR) Ciudad Universitaria, Pab. 2 1428 Buenos Aires Argentina

Instituto de Química Rosario (CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario Suipacha 531 Rosario 2000 Argentina

出版信息

RSC Adv. 2019 Aug 5;9(42):24134-24145. doi: 10.1039/c9ra03524a. eCollection 2019 Aug 2.

DOI:10.1039/c9ra03524a
PMID:35527879
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9069843/
Abstract

The conformational landscape of 22 different non, mono-, and disubstituted compounds with a five-membered ring was thoroughly explored by (MP2) and DFT (B3LYP and M06-2X) methods with the 6-311+G** basis set. Our results showed that the conformational preference of these compounds was governed mainly by the specific characteristics of the substituents, with a minor influence of the level of theory employed. After a detailed analysis of the computational data, we found an interesting preference of the electronegative substituents to take pseudo-axial positions, whereas alkyl groups preferred adopting the pseudo-equatorial locations. Such preferences were pronounced with MP2 and M06-2X and underestimated by B3LYP. Despite each level of theory affording different landscapes in many cases, as a general trend, we noticed that M06-2X afforded much higher correlation with the MP2 results than B3LYP.

摘要

采用(MP2)和DFT(B3LYP和M06 - 2X)方法,在6 - 311 + G**基组下,对22种不同的含五元环的非取代、单取代和双取代化合物的构象态势进行了全面探索。我们的结果表明,这些化合物的构象偏好主要由取代基的特定特征决定,所采用的理论水平影响较小。在对计算数据进行详细分析后,我们发现一个有趣的现象,即电负性取代基倾向于占据假轴向位置,而烷基则更倾向于采取假赤道位置。MP2和M06 - 2X方法下这种偏好很明显,而B3LYP方法则低估了这种偏好。尽管在许多情况下每种理论水平给出的态势不同,但总体趋势是,我们注意到M06 - 2X与MP2结果的相关性比B3LYP高得多。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/4941aa53b527/c9ra03524a-f12.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/e50f294aeade/c9ra03524a-f11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/4941aa53b527/c9ra03524a-f12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/31935e92cfbe/c9ra03524a-f1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/3b48e1881dc2/c9ra03524a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/564dd00ac8cb/c9ra03524a-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/13ff3a3e3094/c9ra03524a-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/13ab51af4994/c9ra03524a-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/9848f38f220c/c9ra03524a-f9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/98d070902060/c9ra03524a-f10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/e50f294aeade/c9ra03524a-f11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70eb/9069843/4941aa53b527/c9ra03524a-f12.jpg

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本文引用的文献

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2
Assessing the Accuracy of Across-the-Scale Methods for Predicting Carbohydrate Conformational Energies for the Examples of Glucose and α-Maltose.以葡萄糖和α-麦芽糖为例评估跨尺度方法预测碳水化合物构象能量的准确性。
J Chem Theory Comput. 2016 Dec 13;12(12):6157-6168. doi: 10.1021/acs.jctc.6b00876. Epub 2016 Nov 29.
3
DFT/PCM theoretical study of the conversion of methyl 4-O-methyl-α-d-galactopyranoside 6-sulfate and its 2-sulfated derivative into their 3,6-anhydro counterparts.
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J Phys Chem A. 2023 Jul 20;127(28):5860-5871. doi: 10.1021/acs.jpca.3c02747. Epub 2023 Jul 7.
4
Understanding the Liquid States of Cyclic Hydrocarbons Containing N, O, and S Atoms via the 3D-RISM-KH Molecular Solvation Theory.通过 3D-RISM-KH 分子溶剂化理论理解含氮、氧和硫原子的环状烃的液态状态。
Molecules. 2022 Oct 4;27(19):6563. doi: 10.3390/molecules27196563.
4-O-甲基-α-D-吡喃半乳糖苷6-硫酸盐及其2-硫酸化衍生物转化为其3,6-脱水对应物的密度泛函理论/极化连续介质模型理论研究
Carbohydr Res. 2016 May 13;426:15-25. doi: 10.1016/j.carres.2016.03.014. Epub 2016 Mar 21.
4
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J Chem Theory Comput. 2012 Aug 14;8(8):2630-45. doi: 10.1021/ct3002305. Epub 2012 Aug 2.
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6
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7
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9
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10
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Phys Chem Chem Phys. 2010 Jan 7;12(1):72-81. doi: 10.1039/b917362e. Epub 2009 Nov 9.