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通过线性规划进行核磁共振 assignments(此处“assignments”可能有特定专业含义,比如化学位移归属等,结合语境可进一步准确翻译)

NMR Assignment through Linear Programming.

作者信息

Bravo-Ferreira José F S, Cowburn David, Khoo Yuehaw, Singer Amit

机构信息

PACM, Princeton University, NJ 08540.

Departments of Biochemistry and of Physiology and Biophysics, Albert Einstein College of Medicine, NY 10461.

出版信息

J Glob Optim. 2022 May;83(1):3-28. doi: 10.1007/s10898-021-01004-3. Epub 2021 Mar 11.

Abstract

Nuclear Magnetic Resonance (NMR) Spectroscopy is the second most used technique (after X-ray crystallography) for structural determination of proteins. A computational challenge in this technique involves solving a discrete optimization problem that assigns the resonance frequency to each atom in the protein. This paper introduces LIAN (LInear programming Assignment for NMR), a novel linear programming formulation of the problem which yields state-of-the-art results in simulated and experimental datasets.

摘要

核磁共振(NMR)光谱学是用于蛋白质结构测定的第二大常用技术(仅次于X射线晶体学)。该技术中的一个计算挑战涉及解决一个离散优化问题,即给蛋白质中的每个原子分配共振频率。本文介绍了LIAN(用于NMR的线性规划分配),这是该问题的一种新颖的线性规划公式,在模拟和实验数据集中均产生了领先的结果。

相似文献

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View from Nuclear Magnetic Resonance Spectroscopy.从核磁共振光谱看。
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Assignment strategy for proteins with known structure.针对已知结构蛋白质的分配策略。
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本文引用的文献

3
Combined automated NOE assignment and structure calculation with CYANA.结合CYANA进行自动NOE归属和结构计算。
J Biomol NMR. 2015 Aug;62(4):453-71. doi: 10.1007/s10858-015-9924-9. Epub 2015 Mar 24.
6
A new algorithm for reliable and general NMR resonance assignment.一种新的可靠且通用的 NMR 共振分配算法。
J Am Chem Soc. 2012 Aug 1;134(30):12817-29. doi: 10.1021/ja305091n. Epub 2012 Jul 23.

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