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HACANCOi:一种新的 H 检测实验,用于对无规卷曲蛋白质的骨架共振进行赋值。

HACANCOi: a new H-detected experiment for backbone resonance assignment of intrinsically disordered proteins.

机构信息

Department of Chemistry, Nanoscience Center, University of Jyväskylä, Jyväskylä, Finland.

Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.

出版信息

J Biomol NMR. 2020 Dec;74(12):741-752. doi: 10.1007/s10858-020-00347-5. Epub 2020 Oct 28.

Abstract

Unidirectional coherence transfer is highly efficient in intrinsically disordered proteins (IDPs). Their elevated ps-ns timescale dynamics ensures long transverse (T) relaxation times allowing sophisticated coherence transfer pathway selection in comparison to folded proteins. H-detection ensures non-susceptibility to chemical exchange with the solvent and enables chemical shift assignment of consecutive proline residues, typically abundant in IDPs. However, many IDPs undergo a disorder-to-order transition upon interaction with their target protein, which leads to the loss of the favorable relaxation properties. Long coherence transfer routes now result in prohibitively large decrease in sensitivity. We introduce a novel 4D H-detected experiment HACANCOi, together with its 3D implementation, which warrant high sensitivity for the assignment of proline-rich regions in IDPs in complex with a globular protein. The experiment correlates H, C, N and [Formula: see text] spins by transferring the magnetization concomitantly from C to N and [Formula: see text]. The B1 domain of protein G (GB1), and the enteropathogenic E. coli EspF in complex with human SNX9 SH3, serve as model systems to demonstrate the attainable sensitivity and successful sequential assignment.

摘要

单向相干转移在无规卷曲蛋白质(IDPs)中非常高效。它们在 ps-ns 时间尺度上的高动态性确保了较长的横向(T)弛豫时间,与折叠蛋白质相比,能够实现更复杂的相干转移途径选择。H 检测确保了与溶剂的化学交换不易发生,并能够对连续脯氨酸残基进行化学位移赋值,脯氨酸残基通常在 IDPs 中丰富存在。然而,许多 IDPs 在与靶蛋白相互作用时会经历无序到有序的转变,这导致有利的弛豫特性丧失。现在,长的相干转移途径导致灵敏度显著下降。我们引入了一种新的 4D H 检测实验 HACANCOi 及其 3D 实现,该实验保证了在与球状蛋白复合物中富含脯氨酸的 IDPs 进行化学位移赋值时具有高灵敏度。该实验通过同时从 C 到 N 和 [Formula: see text] 转移磁化强度,对 H、C、N 和 [Formula: see text] 自旋进行关联。蛋白 G(GB1)的 B1 结构域和与人 SNX9 SH3 结合的肠致病性大肠杆菌 EspF 用作模型系统,以证明可达到的灵敏度和成功的顺序赋值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f4/7701164/6bf2b2b882fa/10858_2020_347_Fig1_HTML.jpg

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