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虎耳草科(虎耳草属)叶绿体基因组全序列

Complete chloroplast genome sequence of (Saxifragaceae).

作者信息

Li Jianfang, Liu Zhan-Lin

机构信息

Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences, Northwest University, Xi'an, China.

出版信息

Mitochondrial DNA B Resour. 2022 May 3;7(5):761-763. doi: 10.1080/23802359.2022.2069523. eCollection 2022.

DOI:10.1080/23802359.2022.2069523
PMID:35528254
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9068006/
Abstract

The phylogenetic relationships among taxa remain unclear due to their diversification. Here, we report the complete chloroplast genome of obtained using high-throughput sequencing technology to provide genomic information for phylogenetic analyses. The plastome is 155,317 bp, with a large single-copy region (LSC) of 86,784 bp, a small single-copy region (SSC) of 18,007 bp, and a pair of 25,263 bp inverted repeat regions (IRs). The genome contains 132 genes, including 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 1 pseudogene. The GC content of the plastome is 37.9%; corresponding values in the LSC, SSC, and IR regions are 36.1%, 31.9%, and 43.3%, respectively. The phylogenetic tree supports the separation of from .

摘要

由于类群的多样化,它们之间的系统发育关系仍不清楚。在此,我们报告了使用高通量测序技术获得的[类群名称]的完整叶绿体基因组,以提供用于系统发育分析的基因组信息。质体基因组为155,317 bp,有一个86,784 bp的大单拷贝区域(LSC)、一个18,007 bp的小单拷贝区域(SSC)和一对25,263 bp的反向重复区域(IR)。该基因组包含132个基因,包括86个蛋白质编码基因、37个tRNA基因、8个rRNA基因和1个假基因。质体基因组的GC含量为37.9%;LSC、SSC和IR区域的相应值分别为36.1%、31.9%和43.3%。系统发育树支持[类群名称]与[类群名称]的分离。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0554/9068006/34e0008a854f/TMDN_A_2069523_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0554/9068006/34e0008a854f/TMDN_A_2069523_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0554/9068006/34e0008a854f/TMDN_A_2069523_F0001_B.jpg

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Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
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A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade (Saxifragaceae).高山-北极植物类群(虎耳草科)进化与不一致性的系统基因组学视角
Front Plant Sci. 2020 Feb 7;10:1773. doi: 10.3389/fpls.2019.01773. eCollection 2019.
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Evolutionary radiations in the species-rich mountain genus Saxifraga L.
物种丰富的山地虎耳草属(虎耳草属)中的进化辐射
BMC Evol Biol. 2017 May 25;17(1):119. doi: 10.1186/s12862-017-0967-2.
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