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大肠杆菌recA蛋白对左手螺旋Z-DNA的结合

Left-handed Z-DNA binding by the recA protein of Escherichia coli.

作者信息

Blaho J A, Wells R D

出版信息

J Biol Chem. 1987 May 5;262(13):6082-8.

PMID:3553186
Abstract

recA binding to left-handed Z-DNA was measured using nitrocellulose filter binding assays with four DNA polymers with defined nucleotide sequences and four recombinant plasmids. Two to 7-fold preferential binding of recA to Z-DNA polymers was observed. Left-handed Z-DNA polymer binding by recA required ATP or its nonhydrolyzable analog, ATP(gamma S), while ADP inhibited binding. Complex formation with both B- and Z-forms was influenced by polymer length; recA bound longer DNAs better. recA binding to recombinant plasmids containing supercoil-stabilized Z-DNA was essentially similar to that found for the control vector; thus, no preferential binding of recA to the Z-form was observed. Comparative experiments with the rec1 protein of Ustilago maydis and the Escherichia coli recA protein were performed. In our hands, recA and rec1 have a similar capacity for binding left-handed Z-DNA polymers and for binding recombinant plasmids containing B- and/or Z-regions. recA contains a left-handed Z-DNA-stimulated ATPase activity. This activity differs from the right-handed B-DNA-stimulated activity since it is less sensitive to increasing pH. The kinetics of ATP hydrolysis in B-DNA/Z-DNA mixing experiments showed that the turnover of the Z-DNA recA complex was slower than for B-DNA suggesting that left-handed Z-DNA is more stably bound by recA. Our results are consistent with the postulate that left-handed Z-DNA is involved in genetic recombination.

摘要

使用硝酸纤维素滤膜结合试验,以四种具有明确核苷酸序列的DNA聚合物和四种重组质粒来测定RecA与左手螺旋Z-DNA的结合。观察到RecA与Z-DNA聚合物有2至7倍的优先结合。RecA与左手螺旋Z-DNA聚合物的结合需要ATP或其不可水解的类似物ATP(γS),而ADP则抑制结合。与B型和Z型的复合物形成受聚合物长度影响;RecA与较长的DNA结合更好。RecA与含有超螺旋稳定Z-DNA的重组质粒的结合与对照载体基本相似;因此,未观察到RecA对Z型的优先结合。对玉米黑粉菌的Rec1蛋白和大肠杆菌RecA蛋白进行了比较实验。在我们的实验中,RecA和Rec1在结合左手螺旋Z-DNA聚合物以及结合含有B区和/或Z区的重组质粒方面具有相似的能力。RecA含有一种受左手螺旋Z-DNA刺激的ATP酶活性。这种活性不同于受右手螺旋B-DNA刺激的活性,因为它对pH升高不太敏感。在B-DNA/Z-DNA混合实验中ATP水解的动力学表明,Z-DNA RecA复合物的周转比B-DNA慢,这表明左手螺旋Z-DNA与RecA的结合更稳定。我们的结果与左手螺旋Z-DNA参与基因重组的假设一致。

相似文献

1
Left-handed Z-DNA binding by the recA protein of Escherichia coli.大肠杆菌recA蛋白对左手螺旋Z-DNA的结合
J Biol Chem. 1987 May 5;262(13):6082-8.
2
Interaction of recA protein with left-handed Z-DNA.RecA蛋白与左手Z-DNA的相互作用。
Biochem J. 1991 May 1;275 ( Pt 3)(Pt 3):711-9. doi: 10.1042/bj2750711.
3
Enhanced recA protein binding to Z DNA represents a kinetic perturbation of a general duplex DNA binding pathway.增强的RecA蛋白与Z-DNA的结合代表了一般双链DNA结合途径的动力学扰动。
J Biol Chem. 1989 Dec 25;264(36):21848-56.
4
Interaction of RecA protein with acidic phospholipids inhibits DNA-binding activity of RecA.RecA蛋白与酸性磷脂的相互作用会抑制RecA的DNA结合活性。
J Bacteriol. 1990 Nov;172(11):6452-8. doi: 10.1128/jb.172.11.6452-6458.1990.
5
Left-handed DNA and the synaptic pairing reaction promoted by Ustilago rec1 protein.
Cell. 1985 Jan;40(1):139-45. doi: 10.1016/0092-8674(85)90317-4.
6
Three-strand exchange by the Escherichia coli RecA protein using ITP as a nucleotide cofactor: mechanistic parallels with the ATP-dependent reaction of the RecA protein from Streptococcus pneumoniae.大肠杆菌RecA蛋白以肌苷三磷酸(ITP)作为核苷酸辅因子进行的三链交换:与肺炎链球菌RecA蛋白的ATP依赖性反应的机制相似性
J Biol Chem. 2003 Sep 19;278(38):35889-96. doi: 10.1074/jbc.M305470200. Epub 2003 Jul 3.
7
High salt activation of recA protein ATPase in the absence of DNA.
J Biol Chem. 1988 Jan 5;263(1):76-83.
8
Crystal structures of Escherichia coli RecA in complex with MgADP and MnAMP-PNP.大肠杆菌RecA与MgADP和MnAMP-PNP复合物的晶体结构。
Biochemistry. 2004 Dec 28;43(51):16142-52. doi: 10.1021/bi048165y.
9
Kinetics of DNA renaturation catalyzed by the RecA protein of Escherichia coli.大肠杆菌RecA蛋白催化的DNA复性动力学
Biochemistry. 1985 Jul 30;24(16):4345-51. doi: 10.1021/bi00337a014.
10
Interaction of the recA protein of Escherichia coli with adenosine 5'-O-(3-thiotriphosphate).大肠杆菌recA蛋白与腺苷5'-O-(3-硫代三磷酸)的相互作用。
J Biol Chem. 1981 Aug 25;256(16):8850-5.

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含 8-三氟甲基-2'-脱氧鸟苷的寡核苷酸 DNA,用于观察 Z-DNA 结构。
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6
The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.通过具有显式溶剂化的靶向分子动力学模拟研究DNA的B构象和Z构象之间的转变。
Biophys J. 2006 Oct 15;91(8):2976-90. doi: 10.1529/biophysj.106.083667.
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Meiotic recombination hotspots: shaping the genome and insights into hypervariable minisatellite DNA change.减数分裂重组热点:塑造基因组及对高变微卫星DNA变化的见解
Curr Top Dev Biol. 1998;37:37-75. doi: 10.1016/s0070-2153(08)60171-4.
8
Z-DNA binding protein from chicken blood nuclei.来自鸡血细胞核的Z-DNA结合蛋白。
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3339-42. doi: 10.1073/pnas.90.8.3339.
9
Left-handed Z-DNA and in vivo supercoil density in the Escherichia coli chromosome.大肠杆菌染色体中的左手Z-DNA与体内超螺旋密度
Proc Natl Acad Sci U S A. 1994 Oct 11;91(21):9980-4. doi: 10.1073/pnas.91.21.9980.
10
Z-DNA-binding proteins from bull testis.来自公牛睾丸的Z-DNA结合蛋白。
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