Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06466 Seeland, OT Gatersleben, Germany.
Plant J. 2022 Jul;111(2):335-347. doi: 10.1111/tpj.15804. Epub 2022 Jun 5.
The research data life cycle from project planning to data publishing is an integral part of current research. Until the last decade, researchers were responsible for all associated phases in addition to the actual research and were assisted only at certain points by IT or bioinformaticians. Starting with advances in sequencing, the automation of analytical methods in all life science fields, including in plant phenotyping, has led to ever-increasing amounts of ever more complex data. The tasks associated with these challenges now often exceed the expertise of and infrastructure available to scientists, leading to an increased risk of data loss over time. The IPK Gatersleben has one of the world's largest germplasm collections and two decades of experience in crop plant research data management. In this article we show how challenges in modern, data-driven research can be addressed by data stewards. Based on concrete use cases, data management processes and best practices from plant phenotyping, we describe which expertise and skills are required and how data stewards as an integral actor can enhance the quality of a necessary digital transformation in progressive research.
研究数据的生命周期从项目规划到数据发布,是当前研究的一个组成部分。直到过去十年,研究人员除了实际研究之外,还负责所有相关的阶段,并且仅在某些时候由 IT 或生物信息学专家提供协助。从测序技术的进步开始,包括在植物表型分析在内的所有生命科学领域的分析方法自动化,导致了数据量的不断增加,而且数据也变得越来越复杂。现在,这些挑战所涉及的任务往往超出了科学家的专业知识和基础设施,导致数据随着时间的推移而丢失的风险增加。IPK Gatersleben 拥有世界上最大的种质资源库之一,并在作物植物研究数据管理方面拥有二十年的经验。在本文中,我们将展示数据管理员如何应对现代数据驱动研究中的挑战。基于植物表型的具体用例、数据管理流程和最佳实践,我们描述了所需的专业知识和技能,以及数据管理员作为一个不可或缺的角色,如何能够提高渐进式研究中必要的数字化转型的质量。