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研究非刚性分子构象熵的溶剂化效应。

Towards understanding solvation effects on the conformational entropy of non-rigid molecules.

机构信息

Mulliken Center for Theoretical Chemistry, Institute for Physical and Theoretical Chemistry, University of Bonn, Beringstr. 4, 53115 Bonn, Germany.

Institute for Physical Chemistry, RWTH Aachen University, Melatener Str. 20, 52056 Aachen, Germany.

出版信息

Phys Chem Chem Phys. 2022 May 25;24(20):12249-12259. doi: 10.1039/d1cp05805c.

Abstract

The absolute molecular entropy is a fundamental quantity for the accurate description of thermodynamic properties. For non-rigid molecules, a substantial part of the entropy can be attributed to a conformational contribution. Systems and properties where this is relevant, , protein-ligand binding affinities or p values refer usually to the liquid phase. In this work, the influence of solvation on the conformational entropy is investigated. A recently introduced state-of-the-art and automated computational protocol for the computation of conformational entropies [Pracht , , 2021, , 6551-6568.] is applied in combination with fast and accurate semiempirical quantum-chemical methods and implicit solvation models for a set of 25 commercially available drug molecules and five transition metal compounds. Computed gas-phase conformational entropies are compared with values obtained in implicit -hexane and water. It is found that implicit solvation can have a substantial effect of several cal mol K on the entropy as a result of large conformational changes in the different phases. We conclude that for flexible molecules chemical accuracy for free energies in solution can only be achieved if solvation effects on the conformational ensemble are considered.

摘要

绝对分子熵是准确描述热力学性质的基本物理量。对于非刚性分子,熵的很大一部分可以归因于构象贡献。在蛋白质配体结合亲和力或 p 值等相关系统和性质中,通常指的是液相。在这项工作中,研究了溶剂化对构象熵的影响。最近引入了一种用于构象熵计算的最先进和自动化的计算协议[Pracht,, 2021,, 6551-6568.],结合快速准确的半经验量子化学方法和隐式溶剂化模型,对一组 25 种市售药物分子和 5 种过渡金属化合物进行了计算。将气相构象熵与在隐式 -己烷和水中获得的值进行比较。结果发现,由于不同相中的构象发生了很大变化,溶剂化对熵的影响可能高达几个 cal mol K。我们得出的结论是,对于柔性分子,如果不考虑构象集合上的溶剂化效应,溶液中自由能的化学精度是无法实现的。

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