Soares Douglas M M, Gonçalves Letícia C P, Machado Caroline O, Esteves Larissa C, Stevani Cassius V, Oliveira Carla C, Dörr Felipe A, Pinto Ernani, Adachi Flávia M M, Hotta Carlos T, Bastos Erick L
Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, 05508-000 São Paulo, São Paulo Brazil.
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, 05508-000 São Paulo, São Paulo Brazil.
ACS Omega. 2022 Apr 25;7(18):16070-16079. doi: 10.1021/acsomega.2c01365. eCollection 2022 May 10.
The l-DOPA dioxygenase of (AmDODA) participates in the biosynthesis of betalain- and hygroaurin-type natural pigments. AmDODA is encoded by the gene, whose DNA sequence was inferred from cDNA and gDNA libraries almost 30 years ago. However, reports on its heterologous expression rely on either the original 5'-truncated cDNA plasmid or artificial gene synthesis. We provide unequivocal evidence that the heterologous expression of AmDODA from specimens is not possible by using the coding sequence previously inferred for . Here, we rectify and reannotate the full-length coding sequence for AmDODA and express a 205-aa His-tagged active enzyme, which was used to produce the l-DOPA hygroaurin, a rare fungal pigment. Moreover, AmDODA and other isozymes from bacteria were submitted to folding using deep learning algorithms, and their putative active sites were inferred and compared. The wide catalytic pocket of AmDODA and the presence of the His-His-His and His-His-Asp motifs can provide insight into the dual cleavage of l-DOPA at positions 2,3 and 4,5 as per the mechanism proposed for nonheme dioxygenases.
(某菌的)L-多巴双加氧酶(AmDODA)参与甜菜红素和潮霉素型天然色素的生物合成。AmDODA由(某)基因编码,其DNA序列大约在30年前从cDNA和gDNA文库中推导得出。然而,关于其异源表达的报道要么依赖于原始的5'-截短cDNA质粒,要么依赖于人工基因合成。我们提供了明确的证据表明,使用先前推导的(某菌)编码序列无法实现来自(某菌)标本的AmDODA的异源表达。在此,我们校正并重新注释了AmDODA的全长编码序列,并表达了一种带有205个氨基酸的His标签的活性酶,该酶用于生产一种罕见的真菌色素L-多巴潮霉素。此外,利用深度学习算法对AmDODA和来自细菌的其他同工酶进行了折叠预测,并推断和比较了它们的假定活性位点。根据为非血红素双加氧酶提出的机制,AmDODA的宽催化口袋以及His-His-His和His-His-Asp基序的存在可以为L-多巴在2,3位和4,5位的双重裂解提供见解。