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将新关键事件整合到现有的氧化DNA损伤不良结局途径中的案例研究:数据丰富领域的挑战与方法

A Case Study on Integrating a New Key Event Into an Existing Adverse Outcome Pathway on Oxidative DNA Damage: Challenges and Approaches in a Data-Rich Area.

作者信息

Huliganga Elizabeth, Marchetti Francesco, O'Brien Jason M, Chauhan Vinita, Yauk Carole L

机构信息

Department of Biology, University of Ottawa, Ottawa, ON, Canada.

Mechanistic Studies Division, Environmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada.

出版信息

Front Toxicol. 2022 Apr 28;4:827328. doi: 10.3389/ftox.2022.827328. eCollection 2022.

Abstract

Adverse outcome pathways (AOPs) synthesize toxicological information to convey and weigh evidence in an accessible format. AOPs are constructed in modules that include key events (KEs) and key event relationships (KERs). This modular structure facilitates AOP expansion and network development. AOP development requires finding relevant information to evaluate the weight of evidence supporting each KER. To do this, the use of transparent/reproducible search methods, such as systematic review (SR), have been proposed. Applying SR to AOP development in a data-rich area is difficult as SR requires screening each article returned from a search. Here we describe a case study to integrate a single new KE into an existing AOP. We explored the use of SR concepts and software to conduct a transparent and documented literature search to identify empirical data supporting the incorporation of a new KE, increase in cellular reactive oxygen species (ROS), upstream of an existing AOP: "Oxidative DNA Damage Leading to Chromosomal Aberrations and Mutations". Connecting this KE to the AOP is supported by the development of five new KERs, the most important being the first adjacent KER (increase in ROS leading to oxidative DNA damage). We initially searched for evidence of all five KERs and screened 100 papers to develop a preliminary evidence map. After removing papers not containing relevant data based on our Population, Exposure, Comparator and Outcome statement, 39 articles supported one or more KERs; these primarily addressed temporal or dose concordance of the non-adjacent KERs with limited evidence supporting the first adjacent KER. We thus conducted a second focused set of searches using search terms for specific methodologies to measure these first two KEs. After screening, 12 articles were identified that contained quantitative evidence supporting the first adjacent KER. Given that integrating a new KE into an existing AOP requires the development of multiple KERs, this approach of building a preliminary evidence map, focusing evidence gathering on the first adjacent KER, and applying reproducible search strategies using specific methodologies for the first adjacent KER, enabled us to prioritize studies to support expansion of this data-rich AOP.

摘要

不良结局途径(AOPs)整合毒理学信息,以一种易于理解的形式传达和权衡证据。AOPs由包括关键事件(KEs)和关键事件关系(KERs)的模块构建而成。这种模块化结构便于AOP的扩展和网络发展。AOP的开发需要寻找相关信息,以评估支持每个KER的证据权重。为此,有人提出使用透明/可重复的搜索方法,如系统评价(SR)。在数据丰富的领域将SR应用于AOP开发很困难,因为SR需要筛选搜索返回的每一篇文章。在此,我们描述一个案例研究,即将一个新的KE整合到现有的AOP中。我们探索使用SR概念和软件进行透明且有记录的文献检索,以识别支持将新的KE(细胞活性氧(ROS)增加)纳入现有AOP“氧化DNA损伤导致染色体畸变和突变”上游的实证数据。将这个KE与AOP相连接得到五个新KER的支持,其中最重要的是第一个相邻KER(ROS增加导致氧化DNA损伤)。我们最初搜索了所有五个KER的证据,并筛选了100篇论文以绘制初步的证据图谱。根据我们的人群、暴露、对照和结局声明,去除不包含相关数据的论文后,39篇文章支持一个或多个KER;这些文章主要探讨了非相邻KER的时间或剂量一致性,而支持第一个相邻KER的证据有限。因此,我们使用特定方法的搜索词进行了第二轮重点搜索,以测量这前两个KE。筛选后,确定了12篇包含支持第一个相邻KER定量证据的文章。鉴于将新的KE整合到现有的AOP中需要开发多个KER,这种构建初步证据图谱、将证据收集重点放在第一个相邻KER上以及使用针对第一个相邻KER的特定方法应用可重复搜索策略的方法,使我们能够优先开展研究,以支持这个数据丰富的AOP的扩展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/34f0/9097222/75a4ee11b952/ftox-04-827328-g001.jpg

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