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不良结局途径(AOP)的发展I:策略与原则。

Adverse outcome pathway (AOP) development I: strategies and principles.

作者信息

Villeneuve Daniel L, Crump Doug, Garcia-Reyero Natàlia, Hecker Markus, Hutchinson Thomas H, LaLone Carlie A, Landesmann Brigitte, Lettieri Teresa, Munn Sharon, Nepelska Malgorzata, Ottinger Mary Ann, Vergauwen Lucia, Whelan Maurice

机构信息

*US EPA Mid-Continent Ecology Division, 6201 Congdon Blvd, Duluth, Minnesota 55804, Environment Canada, Ecotoxicology and Wildlife Health Division, Ottawa, Ontario, K1A 0H3 Canada, Mississippi State University, Institute for Genomics, Biocomputing and Biotechnology, Starkville, Mississippi 39762, University of Saskatchewan, School of the Environment and Sustainability and Toxicology Centre, Saskatoon, Saskatchewan, SK S7N 5B3, Canada, University of Plymouth, School of Biological Sciences, Plymouth, Devon, PL4 8AA, UK, University of Minnesota, Water Resources Center, St. Paul, Minnesota 55108, European Commission, Joint Research Centre, Via E. Fermi 2749, 21027 Ispra, Italy, Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77004, Zebrafishlab, Veterinary Physiology and Biochemistry, Department of Veterinary Sciences, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium

*US EPA Mid-Continent Ecology Division, 6201 Congdon Blvd, Duluth, Minnesota 55804, Environment Canada, Ecotoxicology and Wildlife Health Division, Ottawa, Ontario, K1A 0H3 Canada, Mississippi State University, Institute for Genomics, Biocomputing and Biotechnology, Starkville, Mississippi 39762, University of Saskatchewan, School of the Environment and Sustainability and Toxicology Centre, Saskatoon, Saskatchewan, SK S7N 5B3, Canada, University of Plymouth, School of Biological Sciences, Plymouth, Devon, PL4 8AA, UK, University of Minnesota, Water Resources Center, St. Paul, Minnesota 55108, European Commission, Joint Research Centre, Via E. Fermi 2749, 21027 Ispra, Italy, Department of Biology and Biochemistry, University of Houston, Houston, Texas, 77004, Zebrafishlab, Veterinary Physiology and Biochemistry, Department of Veterinary Sciences, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk, Belgium.

出版信息

Toxicol Sci. 2014 Dec;142(2):312-20. doi: 10.1093/toxsci/kfu199.

Abstract

An adverse outcome pathway (AOP) is a conceptual framework that organizes existing knowledge concerning biologically plausible, and empirically supported, links between molecular-level perturbation of a biological system and an adverse outcome at a level of biological organization of regulatory relevance. Systematic organization of information into AOP frameworks has potential to improve regulatory decision-making through greater integration and more meaningful use of mechanistic data. However, for the scientific community to collectively develop a useful AOP knowledgebase that encompasses toxicological contexts of concern to human health and ecological risk assessment, it is critical that AOPs be developed in accordance with a consistent set of core principles. Based on the experiences and scientific discourse among a group of AOP practitioners, we propose a set of five fundamental principles that guide AOP development: (1) AOPs are not chemical specific; (2) AOPs are modular and composed of reusable components-notably key events (KEs) and key event relationships (KERs); (3) an individual AOP, composed of a single sequence of KEs and KERs, is a pragmatic unit of AOP development and evaluation; (4) networks composed of multiple AOPs that share common KEs and KERs are likely to be the functional unit of prediction for most real-world scenarios; and (5) AOPs are living documents that will evolve over time as new knowledge is generated. The goal of the present article was to introduce some strategies for AOP development and detail the rationale behind these 5 key principles. Consideration of these principles addresses many of the current uncertainties regarding the AOP framework and its application and is intended to foster greater consistency in AOP development.

摘要

不良结局途径(AOP)是一个概念框架,它整合了有关生物系统分子水平扰动与具有监管相关性的生物组织水平上的不良结局之间生物学上合理且有实证支持的联系的现有知识。将信息系统地组织到AOP框架中,有可能通过更好地整合和更有意义地使用机制数据来改进监管决策。然而,为了科学界能够共同开发一个有用的AOP知识库,涵盖对人类健康和生态风险评估至关重要的毒理学背景,至关重要的是,AOP应按照一套一致的核心原则来开发。基于一组AOP从业者的经验和科学讨论,我们提出了一套指导AOP开发的五项基本原则:(1)AOP不是针对特定化学物质的;(2)AOP是模块化的,由可重复使用的组件组成——特别是关键事件(KE)和关键事件关系(KER);(3)由单个KE和KER序列组成的单个AOP是AOP开发和评估的实用单元;(4)由多个共享共同KE和KER的AOP组成的网络可能是大多数实际场景预测的功能单元;(5)AOP是活的文件,将随着新知识的产生而随时间演变。本文的目的是介绍一些AOP开发策略,并详细阐述这五项关键原则背后的基本原理。考虑这些原则解决了当前关于AOP框架及其应用的许多不确定性问题,并旨在促进AOP开发中的更大一致性。

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本文引用的文献

1
Adverse outcome pathway development II: best practices.
Toxicol Sci. 2014 Dec;142(2):321-30. doi: 10.1093/toxsci/kfu200.
2
Applying Adverse Outcome Pathways (AOPs) to support Integrated Approaches to Testing and Assessment (IATA).
Regul Toxicol Pharmacol. 2014 Dec;70(3):629-40. doi: 10.1016/j.yrtph.2014.09.009. Epub 2014 Sep 27.
3
Development of an adverse outcome pathway for acetylcholinesterase inhibition leading to acute mortality.
Environ Toxicol Chem. 2014 Oct;33(10):2157-69. doi: 10.1002/etc.2662. Epub 2014 Aug 25.
4
Chemical respiratory allergy: reverse engineering an adverse outcome pathway.
Toxicology. 2014 Apr 6;318:32-9. doi: 10.1016/j.tox.2014.02.001. Epub 2014 Feb 15.
5
Development of yeast reporter assay for screening specific ligands of retinoic acid and retinoid X receptor subtypes.
J Pharmacol Toxicol Methods. 2014 May-Jun;69(3):245-52. doi: 10.1016/j.vascn.2014.01.007. Epub 2014 Feb 12.
8
Identification of putative estrogen receptor-mediated endocrine disrupting chemicals using QSAR- and structure-based virtual screening approaches.
Toxicol Appl Pharmacol. 2013 Oct 1;272(1):67-76. doi: 10.1016/j.taap.2013.04.032. Epub 2013 May 23.
9
Sequence and in vitro function of chicken, ring-necked pheasant, and Japanese quail AHR1 predict in vivo sensitivity to dioxins.
Environ Sci Technol. 2012 Mar 6;46(5):2967-75. doi: 10.1021/es2043992. Epub 2012 Feb 16.
10
Disruption of embryonic vascular development in predictive toxicology.
Birth Defects Res C Embryo Today. 2011 Dec;93(4):312-23. doi: 10.1002/bdrc.20223.

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