从极端酸性地热环境中分离得到的新型中度嗜热、铁和硫氧化厚壁菌菌株Y002的基因组草图序列
Draft Genome Sequence of the Novel, Moderately Thermophilic, Iron- and Sulfur-Oxidizing Firmicute Strain Y002, Isolated from an Extremely Acidic Geothermal Environment.
作者信息
Bitencourt José, Scholte Larissa, Oliveira Renato, Morais Daniel, Nunes Gisele, Nancucheo Ivan, Valadares Rafael, Holmes David S, Johnson D Barrie, Alves Ronnie, Oliveira Guilherme
机构信息
Instituto Tecnológico Vale, Belém, Pará, Brazil.
René Rachou Institute, Fiocruz, Belo Horizonte, Minas Gerais, Brazil.
出版信息
Microbiol Resour Announc. 2022 Jun 16;11(6):e0014922. doi: 10.1128/mra.00149-22. Epub 2022 May 16.
Abstract
We report the draft genome sequence of the Firmicute strain Y002, a facultatively anaerobic, acidophilic bacterium that catalyzes the dissimilatory oxidation of iron and sulfur and the reduction of ferric iron. Analysis of the genome (2.9 Mb; G+C content, 46 mol%) provided insights into its ability to grow in extremely acidic geothermal environments.
摘要
我们报告了厚壁菌门菌株Y002的基因组序列草图，该菌株为兼性厌氧嗜酸菌，可催化铁和硫的异化氧化以及三价铁的还原。对该基因组（2.9 Mb；G+C含量为46 mol%）的分析为其在极端酸性地热环境中的生长能力提供了见解。
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本文引用的文献
1
Bacterial microcompartments.细菌微室
Nat Rev Microbiol. 2018 May;16(5):277-290. doi: 10.1038/nrmicro.2018.10. Epub 2018 Mar 5.
2
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
Isolation and characterisation of mineral-oxidising "Acidibacillus" spp. from mine sites and geothermal environments in different global locations.从全球不同地点的矿区和地热环境中分离并鉴定矿物氧化“嗜酸芽孢杆菌”属菌种。
Res Microbiol. 2016 Sep;167(7):613-23. doi: 10.1016/j.resmic.2016.04.008. Epub 2016 May 3.
4
A Ferrous Iron Exporter Mediates Iron Resistance in Shewanella oneidensis MR-1.一种亚铁离子转运蛋白介导希瓦氏菌MR-1的铁抗性。
Appl Environ Microbiol. 2015 Nov;81(22):7938-44. doi: 10.1128/AEM.02835-15. Epub 2015 Sep 4.
5
Expression and activity of the Calvin-Benson-Bassham cycle transcriptional regulator CbbR from Acidithiobacillus ferrooxidans in Ralstonia eutropha.嗜酸氧化亚铁硫杆菌卡尔文-本森-巴斯姆循环转录调节因子CbbR在真养产碱杆菌中的表达及活性
FEMS Microbiol Lett. 2015 Aug;362(15):fnv108. doi: 10.1093/femsle/fnv108. Epub 2015 Jul 6.
6
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
7
Whole-genome sequencing reveals novel insights into sulfur oxidation in the extremophile Acidithiobacillus thiooxidans.全基因组测序揭示了嗜极嗜酸氧化硫硫杆菌中硫氧化的新见解。
BMC Microbiol. 2014 Jul 4;14:179. doi: 10.1186/1471-2180-14-179.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Quality control and preprocessing of metagenomic datasets.宏基因组数据集的质量控制和预处理。
Bioinformatics. 2011 Mar 15;27(6):863-4. doi: 10.1093/bioinformatics/btr026. Epub 2011 Jan 28.
10
Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans.嗜酸氧化亚铁硫杆菌中Fur调控基因的生物信息学预测及实验验证
Nucleic Acids Res. 2007;35(7):2153-66. doi: 10.1093/nar/gkm068. Epub 2007 Mar 13.
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