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The roles of the nitrate reductase NarGHJI, the nitrite reductase NirBD and the response regulator GlnR in nitrate assimilation of Mycobacterium tuberculosis.硝酸还原酶NarGHJI、亚硝酸还原酶NirBD及应答调节因子GlnR在结核分枝杆菌硝酸盐同化中的作用
Microbiology (Reading). 2009 Apr;155(Pt 4):1332-1339. doi: 10.1099/mic.0.023275-0.
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Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.氧化亚铁硫杆菌的代谢：从基因组序列到工业应用
BMC Genomics. 2008 Dec 11;9:597. doi: 10.1186/1471-2164-9-597.
3
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.三种本土生物浸出细菌中碳和氮同化机制的比较基因组分析：预测与验证
BMC Genomics. 2008 Dec 3;9:581. doi: 10.1186/1471-2164-9-581.
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Assembling genomic DNA sequences with PHRAP.使用PHRAP组装基因组DNA序列。
Curr Protoc Bioinformatics. 2007 Mar;Chapter 11:Unit11.4. doi: 10.1002/0471250953.bi1104s17.
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Viewing and editing assembled sequences using Consed.使用Consed查看和编辑拼接序列。
Curr Protoc Bioinformatics. 2003 Aug;Chapter 11:Unit11.2. doi: 10.1002/0471250953.bi1102s02.
6
Regulation of a novel Acidithiobacillus caldus gene cluster involved in metabolism of reduced inorganic sulfur compounds.参与还原态无机硫化合物代谢的嗜热嗜酸硫杆菌新基因簇的调控
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Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans.嗜酸氧化亚铁硫杆菌中Fur调控基因的生物信息学预测及实验验证
Nucleic Acids Res. 2007;35(7):2153-66. doi: 10.1093/nar/gkm068. Epub 2007 Mar 13.
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Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
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Thiosulphate oxidation in the phototrophic sulphur bacterium Allochromatium vinosum.光合硫细菌嗜酒色杆菌中硫代硫酸盐的氧化作用
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Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans.在化能自养型嗜酸氧化亚铁硫杆菌中鉴定参与细胞外多糖前体形成的基因簇。
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嗜酸性细菌嗜酸性氧化硫硫杆菌ATCC 51756的基因组草图序列揭示了嗜酸性氧化硫硫杆菌属的代谢多样性。

Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus.

作者信息

Valdes Jorge, Quatrini Raquel, Hallberg Kevin, Dopson Mark, Valenzuela Pablo D T, Holmes David S

机构信息

Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida and Depto. de Ciencias Biologicas, Facultad de Ciencias Biologicas, Universidad Andres Bello, Santiago, Chile.

出版信息

J Bacteriol. 2009 Sep;191(18):5877-8. doi: 10.1128/JB.00843-09. Epub 2009 Jul 17.

DOI:10.1128/JB.00843-09
PMID:19617360
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2737959/
Abstract

Acidithiobacillus caldus is an extremely acidophilic, moderately thermophilic, chemolithoautotrophic gammaproteobacterium that derives energy from the oxidation of sulfur and reduced inorganic sulfur compounds. Here we present the draft genome sequence of Acidithiobacillus caldus ATCC 51756 (the type strain of the species), which has permitted the prediction of genes for survival in extremely acidic environments, including genes for sulfur oxidation and nutrient assimilation.

摘要

嗜热嗜酸硫杆菌是一种极端嗜酸、中度嗜热、化能无机自养γ-变形菌，可从硫和还原态无机硫化合物的氧化过程中获取能量。在此，我们展示了嗜热嗜酸硫杆菌ATCC 51756（该物种的模式菌株）的基因组草图序列，这使得我们能够预测其在极端酸性环境中生存所需的基因，包括硫氧化和养分同化相关基因。