Marine College, Shandong University, Weihai, Shandong 264209, PR China.
State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, PR China.
Int J Syst Evol Microbiol. 2022 May;72(5). doi: 10.1099/ijsem.0.005380.
A Gram-stain-negative, facultatively anaerobic, oxidase-negative and catalase-positive predatory bacillus, designated strain V1718, was isolated from Xiaoshi Island, PR China. Strain V1718 was found to be closely related to SEH01, with 89.8 % similarity in the 16S rRNA gene sequence, followed by FA350 with a similarity of 88.4 %. Strain V1718 had the ability to prey on other bacteria, and selective predation on members of , and occurred with the strain. Growth was observed within the range of 20-45 °C (optimal at 37 °C), pH 6.5-9.0 (optimal at pH 8.0) and 1-10 % NaCl (optimal at 3-4 %, w/v). The predominant cellular fatty acids in strain V1718 were iso-C (53.0 %) and C (19.1 %). The major polar lipids present in the strain were phosphatidylglycerol and phosphatidylethanolamine, and the respiratory quinone was menaquinone MK-7. The complete genome sequence of strain V1718 was 5 847 748 bp with a G+C content of 55.2 mol%. The topology of the phylogenomic tree indicated that strain V1718 forms a separate branch in the same clade with the genus and the family . The average nucleotide identity and average amino acid identity values were 66.4 and 48.6 %, respectively, with FA350 (type species of ) and 66.8 % and 48.9 % with B210 (type species of ). The genes related to biosynthesis pathways of several important chemical compounds could not be found in the genome of strain V1718, which was predicted to be the intrinsic reason for predation in this group. The physiological, biochemical and phylogenetic properties of strain V1718 suggest that it belongs to a novel family distinct from other culturable bradymonabacteria. The name gen. nov., sp. nov. is proposed, with strain V1718 (=KCTC 72082=MCCC 1H00380) as type strain; the name fam. nov. is also proposed. Meanwhile, the genus can also be taxonomic classified as fam. nov. Thus, two novel families and a novel genus of the order are proposed in this paper.
一株革兰氏阴性、兼性厌氧、氧化酶阴性和接触酶阳性的捕食杆菌,被命名为 V1718 菌株,从中国小嶝岛分离得到。V1718 菌株与 SEH01 密切相关,其 16S rRNA 基因序列相似性为 89.8%,其次是 FA350,相似性为 88.4%。V1718 菌株具有捕食其他细菌的能力,对 、 和 属的成员具有选择性捕食作用。该菌株在 20-45°C(最佳温度为 37°C)、pH 6.5-9.0(最佳 pH 为 8.0)和 1-10%NaCl(最佳为 3-4%,w/v)范围内生长。V1718 菌株的主要细胞脂肪酸为 iso-C(53.0%)和 C(19.1%)。该菌株存在的主要极性脂是磷脂酰甘油和磷脂酰乙醇胺,呼吸醌是 MK-7 menaquinone。V1718 菌株的全基因组序列为 5847748bp,G+C 含量为 55.2mol%。系统发育树的拓扑结构表明,V1718 菌株与 属和 科形成一个单独的分支。V1718 菌株与 FA350(属的模式种)的平均核苷酸同一性和平均氨基酸同一性值分别为 66.4%和 48.6%,与 B210(属的模式种)的分别为 66.8%和 48.9%。在 V1718 菌株的基因组中没有发现与几种重要化合物生物合成途径相关的基因,这被预测是该组捕食的内在原因。V1718 菌株的生理、生化和系统发育特性表明,它属于一个与其他可培养的慢生菌不同的新型家族。建议使用 V1718 菌株(=KCTC 72082=MCCC 1H00380)作为模式菌株,创建一个新的属和新的科,命名为 gen. nov.,sp. nov.;同时, 属也可以被分类为 科。因此,本文提出了一个新的目、一个新的属和两个新的科。