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海洋沉积物中分离得到的新菌属——动性杆菌属,新种。

Kineobactrum sediminis gen. nov., sp. nov., isolated from marine sediment.

机构信息

Marine College, Shandong University, Weihai, 264209, PR China.

State key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Aug;69(8):2395-2400. doi: 10.1099/ijsem.0.003492. Epub 2019 May 30.

Abstract

A novel Gram-stain-negative, rod-shaped marine bacterium, designated strain F02, was isolated from a marine saltern in Weihai, PR China. The cells of strain F02 were approximately 0.8-1.0×3.0-4.0 µm and motile by means of a polar flagellum. Strain F02 grew optimally at 33-35 °C, pH 7.5 and in the presence of 3.0 % (w/v) NaCl. Strain F02 showed oxidase- and catalase-positive activities. Phylogenetic analysis of 16S rRNA gene sequences revealed that strain F02 belonged to the family Halieaceae and exhibited 16S rRNA gene sequence similarities of 96.6 and 96.4 % to the type strains of Chromatocurvus halotolerans and Parahaliea mediterranea, respectively. The major cellular fatty acids of strain F02 were C18 : 1ω7c, C16 : 1ω7c, C15 : 0 and C18 : 1ω9c. The major polar lipids of strain F02 were phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminolipid. Strain F02 contained Q-8 as the sole respiratory quinone. The genomic DNA G+C content was 58.4 mol%. The genome sequences of strain F02 and Chromatocurvus halotolerans DSM 23344 had an OrthoANI value of 70.5 %, and the average amino acid identity value between the two genomes was 62.6 %. The sequence similarity value between the rpoB genes of strain F02 and Chromatocurvus halotolerans DSM 23344 was 79.5 %. On the basis of polyphasic analysis, strain F02 represents a novel species in a new genus, for which the name Kineobactrum sediminis gen. nov., sp. nov. is proposed. The type strain is F02 (=KCTC 52616=MCCC 1H00224).

摘要

一株新型革兰氏阴性、杆状海洋细菌,被命名为 F02 菌株,从中国山东威海的一个海洋盐场中分离得到。F02 菌株的细胞大约长 0.8-1.0μm,宽 3.0-4.0μm,通过极生鞭毛运动。F02 菌株在 33-35℃、pH7.5 和 3.0%(w/v)NaCl 的条件下生长最佳。F02 菌株氧化酶和过氧化氢酶均呈阳性。16S rRNA 基因序列分析表明,F02 菌株属于 Halieaceae 科,与 Chromatocurvus halotolerans 和 Parahaliea mediterranea 的模式菌株的 16S rRNA 基因序列相似性分别为 96.6%和 96.4%。F02 菌株的主要细胞脂肪酸为 C18:1ω7c、C16:1ω7c、C15:0 和 C18:1ω9c。F02 菌株的主要极性脂为磷脂酰甘油、磷脂酰乙醇胺和一种未鉴定的胺脂。F02 菌株含有 Q-8 作为唯一的呼吸醌。基因组 DNA G+C 含量为 58.4mol%。F02 菌株和 Chromatocurvus halotolerans DSM 23344 的全基因组序列的 OrthoANI 值为 70.5%,两个基因组之间的平均氨基酸同一性值为 62.6%。F02 菌株的 rpoB 基因与 Chromatocurvus halotolerans DSM 23344 的序列相似性为 79.5%。基于多相分析,F02 菌株代表了一个新属中的一个新种,因此提议创建一个新属,命名为 Kineobactrum sediminis gen. nov.,sp. nov.。其模式菌株为 F02 菌株(=KCTC 52616=MCCC 1H00224)。

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