Wu X G, Zhang S C, Zhou X
Department of Cardiology, Second Affiliated Hospital of Soochow University, Suzhou 215000, China.
Zhonghua Xin Xue Guan Bing Za Zhi. 2022 May 24;50(5):501-508. doi: 10.3760/cma.j.cn112148-20220328-00216.
To identify the differentially expressed circular RNA (circRNA) in the myocardium of diabetic cardiomyopathy (DCM) mice, and analyze their possible biological functions and related regulatory network. C57BL/6 mice, aged 8 weeks, and weighing were 21-27 g. Eight mice were selected as the control group and 15 mice were selected as the experimental group. The diabetic mice model was established by intraperitoneal injection of streptozotocin in the experimental group. One week after injection, the fasting blood glucose level of mice was measured, and 12 diabetic mice were included in the final experimental group. All mice were fed for 12 weeks under the same laboratory conditions. The cardiac structure and function were detected by echocardiography. Diabetic mice with the left ventricular ejection fraction less than 60% and the E/A less than 1.6 were selected as DCM group (=3). Mice in DCM group and control group were then sacrificed under deep anesthesia. RNA was extracted from myocardial tissue. High-throughput RNA sequencing technology was used to sequence and identify the RNA in the myocardial tissue of DCM group and normal control group, and the difference was analyzed by DeSeq2. The analysis results were verified at the tissue level by RT-qPCR, and the differential circRNA were analyzed by GO and KEGG pathway analysis. The differentially expressed circRNA-microRNA(miRNA) interaction was predicted by the miRNA target gene prediction software. A total of 63 differentially expressed circRNAs were found in the myocardium of DCM mice. The results of RT-qPCR showed that the tissue level expression of 8 differentially expressed circRNAs was consistent with the sequencing results, of which 7 were up-regulated and 1 was down-regulated. KEGG pathway analysis showed that the up-regulated circRNAs was mainly related to AMPK signal pathway and intercellular adhesion junction pathway, and the down-regulated circRNA was mainly related to cardiomyopathy. Go analysis showed that the up-regulated circRNA was mainly related to the binding process of ions, proteins, kinases and other factors in terms of molecular function, and was involved in regulating the intracellular structure, especially the composition of organelles in terms of cell components. The functional analysis of molecular function and cell components showed that the up-regulated circRNA were related to the cell component origin, recruitment and tissue, and thus participated in the regulation of cell biological process. The down regulated circRNA was related to catalytic activity in terms of molecular function, protein kinase binding process, transferase and calmodulin activity, and was closely related to the components of contractile fibers and the composition of myofibrils. These differentially expressed circRNAs were also related to biological processes such as lysine peptide modification, sarcomere composition, myofibril assembly, morphological development of myocardial tissue, myocardial hypertrophy and so on. In this study, we detected the novel differentially expressed circRNAs in the myocardium of DCM mice, and bioinformatics analysis confirmed that these circRNAs are related to oxidative stress, fibrosis and death of cardiomyocytes, and finally participate in the pathophysiological process of DCM.
鉴定糖尿病性心肌病(DCM)小鼠心肌中差异表达的环状RNA(circRNA),并分析其可能的生物学功能及相关调控网络。选用8周龄、体重21 - 27 g的C57BL/6小鼠。选取8只小鼠作为对照组,15只小鼠作为实验组。实验组通过腹腔注射链脲佐菌素建立糖尿病小鼠模型。注射1周后,测量小鼠空腹血糖水平,最终实验组纳入12只糖尿病小鼠。所有小鼠在相同实验室条件下饲养12周。通过超声心动图检测心脏结构和功能。选取左心室射血分数小于60%且E/A小于1.6的糖尿病小鼠作为DCM组(n = 3)。然后在深度麻醉下处死DCM组和对照组小鼠。从心肌组织中提取RNA。采用高通量RNA测序技术对DCM组和正常对照组心肌组织中的RNA进行测序和鉴定,并通过DeSeq2分析差异。分析结果在组织水平通过RT-qPCR进行验证,对差异circRNA进行GO和KEGG通路分析。通过miRNA靶基因预测软件预测差异表达的circRNA-微小RNA(miRNA)相互作用。在DCM小鼠心肌中共发现63个差异表达的circRNA。RT-qPCR结果显示,8个差异表达circRNA的组织水平表达与测序结果一致,其中7个上调,1个下调。KEGG通路分析表明,上调的circRNA主要与AMPK信号通路和细胞间黏附连接通路相关,下调的circRNA主要与心肌病相关。GO分析表明,上调的circRNA在分子功能方面主要与离子、蛋白质、激酶等因子的结合过程相关,在细胞成分方面参与调节细胞内结构,特别是细胞器的组成。分子功能和细胞成分的功能分析表明,上调的circRNA与细胞成分的起源、募集和组织相关,从而参与细胞生物学过程的调节。下调的circRNA在分子功能方面与催化活性、蛋白激酶结合过程、转移酶和钙调蛋白活性相关,与收缩纤维成分和肌原纤维组成密切相关。这些差异表达的circRNA还与赖氨酸肽修饰、肌节组成、肌原纤维组装、心肌组织形态发育、心肌肥大等生物学过程相关。在本研究中,我们检测到DCM小鼠心肌中新型差异表达的circRNA,生物信息学分析证实这些circRNA与心肌细胞的氧化应激、纤维化和死亡相关,最终参与DCM的病理生理过程。