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环状 RNA 的表达谱及其在早期糖尿病心肌病中的潜在作用。

Expression profiling of circular RNAs and their potential role in early‑stage diabetic cardiomyopathy.

机构信息

Department of Forensic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai 200032, P.R. China.

Department of Forensic Medicine, Hebei Medical University, Hebei Key Laboratory of Forensic Medicine, Shijiazhuang, Hebei 050017, P.R. China.

出版信息

Mol Med Rep. 2020 Sep;22(3):1958-1968. doi: 10.3892/mmr.2020.11248. Epub 2020 Jun 17.

Abstract

Diabetic cardiomyopathy (DCM) is a severe cardiovascular complication of diabetes mellitus (DM). Detecting DCM during the early stages of the disease remains a challenge, as the molecular mechanisms underlying early‑stage DCM are not clearly understood. Circular RNA (circRNA), a type of non‑coding RNA, has been confirmed to be associated with numerous diseases. However, it is still unclear how circRNAs are involved in early‑stage DCM. In the present study, heart tissues harvested from BKS‑db/db knock‑out mice were identified through high‑throughput RNA sequencing technology. A total of 58 significantly differentially expressed circRNAs were identified in the db/db sample. Among these, six upregulated circRNAs and seven downregulated circRNAs were detected by reverse transcription‑quantitative PCR and analyzed using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes. Furthermore, based on the predicted binding site with microRNAs (miRNAs) involved in DCM, five circRNAs (mmu_circ_0000652, mmu_circ_0000547, mmu_circ_0001058, mmu_circ_0000680 and novel_circ_0004285) were shown to serve as competing endogenous (ce)RNAs. The corresponding miRNAs and mRNAs of the ceRNAs were also verified, and two promising circRNA‑miRNA‑mRNA regulatory networks were determined. Finally, internal ribosome entry site prediction combined with open reading frame prediction indicated that it was highly possible that mmu_circ_0001160 encoded a protein. In the present study, a comprehensive analysis of the circRNA expression profile during the early phase of DCM was performed, and two promising circRNA‑miRNA‑mRNA regulatory networks were identified. These results lay the foundation for unravelling the underlying pathogenesis of DCM, and highlight potential biomarkers and therapeutic targets for the treatment of DCM at an early stage.

摘要

糖尿病心肌病(DCM)是糖尿病(DM)的一种严重心血管并发症。在疾病早期检测 DCM 仍然是一个挑战,因为早期 DCM 的分子机制尚不清楚。环状 RNA(circRNA)是一种非编码 RNA,已被证实与许多疾病有关。然而,circRNA 如何参与早期 DCM 仍然不清楚。在本研究中,通过高通量 RNA 测序技术鉴定了 BKS-db/db 敲除小鼠的心脏组织。在 db/db 样本中鉴定出 58 个显著差异表达的 circRNA。其中,通过逆转录-定量 PCR 检测到 6 个上调的 circRNA 和 7 个下调的 circRNA,并通过基因本体论和京都基因与基因组百科全书进行分析。此外,基于与 DCM 相关的 miRNA(miRNA)的预测结合位点,鉴定出 5 个 circRNA(mmu_circ_0000652、mmu_circ_0000547、mmu_circ_0001058、mmu_circ_0000680 和 novel_circ_0004285)作为竞争性内源(ce)RNA。ceRNA 的相应 miRNA 和 mRNAs 也得到了验证,并确定了两个有前途的 circRNA-miRNA-mRNA 调控网络。最后,内部核糖体进入位点预测结合开放阅读框预测表明,mmu_circ_0001160 极有可能编码蛋白质。本研究对 DCM 早期阶段的 circRNA 表达谱进行了全面分析,并确定了两个有前途的 circRNA-miRNA-mRNA 调控网络。这些结果为揭示 DCM 的潜在发病机制奠定了基础,并为早期治疗 DCM 提供了有潜力的生物标志物和治疗靶点。

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