Ngai Stephanie, Sell Jessica, Baig Samia, Iqbal Maryam, Eddy Meredith, Culp Gretchen, Montesano Matthew, McGibbon Emily, Johnson Kimberly, Devinney Katelynn, Baumgartner Jennifer, Huynh Mary, Mathes Robert, Van Wye Gretchen, Fine Annie D, Thompson Corinne N
The New York City Department of Health and Mental Hygiene, Long Island City, New York, USA.
JAMIA Open. 2022 May 18;5(2):ooac029. doi: 10.1093/jamiaopen/ooac029. eCollection 2022 Jul.
New York City (NYC) experienced a large first wave of coronavirus disease 2019 (COVID-19) in the spring of 2020, but the Health Department lacked tools to easily visualize and analyze incoming surveillance data to inform response activities. To streamline ongoing surveillance, a group of infectious disease epidemiologists built an interactive dashboard using open-source software to monitor demographic, spatial, and temporal trends in COVID-19 epidemiology in NYC in near real-time for internal use by other surveillance and epidemiology experts.
Existing surveillance databases and systems were leveraged to create daily analytic datasets of COVID-19 case and testing information, aggregated by week and key demographics. The dashboard was developed iteratively using R, and includes interactive graphs, tables, and maps summarizing recent COVID-19 epidemiologic trends. Additional data and interactive features were incorporated to provide further information on the spread of COVID-19 in NYC.
The dashboard allows key staff to quickly review situational data, identify concerning trends, and easily maintain granular situational awareness of COVID-19 epidemiology in NYC.
The dashboard is used to inform weekly surveillance summaries and alleviated the burden of manual report production on infectious disease epidemiologists. The system was built by and for epidemiologists, which is critical to its utility and functionality. Interactivity allows users to understand broad and granular data, and flexibility in dashboard development means new metrics and visualizations can be developed as needed.
Additional investment and development of public health informatics tools, along with standardized frameworks for local health jurisdictions to analyze and visualize data in emergencies, are warranted.
2020年春季,纽约市经历了2019冠状病毒病(COVID-19)的第一波大规模疫情,但卫生部门缺乏便于直观呈现和分析传入监测数据以指导应对行动的工具。为简化正在进行的监测工作,一组传染病流行病学家利用开源软件构建了一个交互式仪表板,用于近乎实时地监测纽约市COVID-19流行病学中的人口统计学、空间和时间趋势,供其他监测和流行病学专家内部使用。
利用现有的监测数据库和系统创建COVID-19病例和检测信息的每日分析数据集,按周和关键人口统计学特征进行汇总。该仪表板使用R语言迭代开发,包括交互式图表、表格和地图,总结近期COVID-19的流行病学趋势。纳入了额外的数据和交互式功能,以提供有关COVID-19在纽约市传播的更多信息。
该仪表板使关键工作人员能够快速查看情况数据,识别令人担忧的趋势,并轻松保持对纽约市COVID-19流行病学的详细态势感知。
该仪表板用于为每周监测总结提供信息,并减轻了传染病流行病学家手动制作报告的负担。该系统由流行病学家构建并为其所用,这对其效用和功能至关重要。交互性使用户能够理解广泛和详细的数据,仪表板开发的灵活性意味着可以根据需要开发新的指标和可视化。
有必要对公共卫生信息学工具进行额外投资和开发,同时为地方卫生管辖区提供标准化框架,以便在紧急情况下分析和可视化数据。