Center for Molecular Medicine, Children's Hospital, Fudan University and Shanghai Key Laboratory of Medical Epigenetics, International Laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, China; email:
Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Therapeutic Innovation Center, Baylor College of Medicine, Houston, Texas, USA; email:
Annu Rev Cell Dev Biol. 2022 Oct 6;38:263-289. doi: 10.1146/annurev-cellbio-120420-125117. Epub 2022 May 24.
Covalently closed, single-stranded circular RNAs can be produced from viral RNA genomes as well as from the processing of cellular housekeeping noncoding RNAs and precursor messenger RNAs. Recent transcriptomic studies have surprisingly uncovered that many protein-coding genes can be subjected to backsplicing, leading to widespread expression of a specific type of circular RNAs (circRNAs) in eukaryotic cells. Here, we discuss experimental strategies used to discover and characterize diverse circRNAs at both the genome and individual gene scales. We further highlight the current understanding of how circRNAs are generated and how the mature transcripts function. Some circRNAs act as noncoding RNAs to impact gene regulation by serving as decoys or competitors for microRNAs and proteins. Others form extensive networks of ribonucleoprotein complexes or encode functional peptides that are translated in response to certain cellular stresses. Overall, circRNAs have emerged as an important class of RNAmolecules in gene expression regulation that impact many physiological processes, including early development, immune responses, neurogenesis, and tumorigenesis.
共价闭合的单链环状 RNA 可由病毒 RNA 基因组以及细胞管家非编码 RNA 和前体信使 RNA 的加工产生。最近的转录组研究令人惊讶地发现,许多蛋白质编码基因可以进行反式剪接,导致真核细胞中广泛表达特定类型的环状 RNA(circRNA)。在这里,我们讨论了用于在基因组和单个基因尺度上发现和表征不同 circRNA 的实验策略。我们进一步强调了目前对 circRNA 如何产生以及成熟转录物如何发挥作用的理解。一些 circRNA 作为非编码 RNA 通过充当 microRNA 和蛋白质的诱饵或竞争者来影响基因调控。其他 circRNA 形成核糖核蛋白复合物的广泛网络或编码功能肽,这些肽在响应某些细胞应激时被翻译。总体而言,circRNA 已成为基因表达调控中一类重要的 RNA 分子,影响许多生理过程,包括早期发育、免疫反应、神经发生和肿瘤发生。