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蛋白质与折纸有多相似?

How Similar Are Proteins and Origami?

机构信息

Independent Researcher, Koranit 2018100, Israel.

Independent Researcher, Kiryat Motzkin 2641312, Israel.

出版信息

Biomolecules. 2022 Apr 21;12(5):622. doi: 10.3390/biom12050622.

DOI:10.3390/biom12050622
PMID:35625549
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9138822/
Abstract

Protein folding and structural biology are highly active disciplines that combine basic research in various fields, including biology, chemistry, physics, and computer science, with practical applications in biomedicine and nanotechnology. However, there are still gaps in the understanding of the detailed mechanisms of protein folding, and protein structure-function relations. In an effort to bridge these gaps, this paper studies the equivalence of proteins and origami. Research on proteins and origami provides strong evidence to support the use of origami folding principles and mechanical models to explain aspects of proteins formation and function. Although not identical, the equivalence of origami and proteins emerges in: (i) the folding processes, (ii) the shape and structure of proteins and origami models, and (iii) the intrinsic mechanical properties of the folded structures/models, which allows them to synchronically fold/unfold and effectively distribute forces to the whole structure. As a result, origami can contribute to the understanding of various key protein-related mechanisms and support the design of de novo proteins and nanomaterials.

摘要

蛋白质折叠和结构生物学是高度活跃的学科,它将生物学、化学、物理学和计算机科学等各个领域的基础研究与生物医学和纳米技术的实际应用相结合。然而,在理解蛋白质折叠的详细机制和蛋白质结构-功能关系方面仍然存在差距。为了弥合这些差距,本文研究了蛋白质和折纸的等价性。蛋白质和折纸的研究为使用折纸折叠原理和力学模型来解释蛋白质形成和功能的某些方面提供了有力的证据。尽管并非完全相同,但折纸和蛋白质在以下方面具有等价性:(i)折叠过程,(ii)蛋白质和折纸模型的形状和结构,以及(iii)折叠结构/模型的内在机械特性,这使得它们能够同步折叠/展开,并有效地将力分配到整个结构。因此,折纸可以帮助理解各种关键的蛋白质相关机制,并支持从头设计蛋白质和纳米材料。

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引用本文的文献

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Molecular Origami: Designing Functional Molecules of the Future.分子折纸术:设计未来的功能分子
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2
Biomimetic Origami: A Biological Influence in Design.仿生折纸:设计中的生物影响
Biomimetics (Basel). 2024 Oct 4;9(10):600. doi: 10.3390/biomimetics9100600.
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Advances in Computational Intelligence-Based Methods of Structure and Function Prediction of Proteins.基于计算智能的蛋白质结构与功能预测方法的进展。

本文引用的文献

1
'It will change everything': DeepMind's AI makes gigantic leap in solving protein structures.“它将改变一切”:深度思维公司的人工智能在解决蛋白质结构问题上取得巨大飞跃。
Nature. 2020 Dec;588(7837):203-204. doi: 10.1038/d41586-020-03348-4.
2
An Approach to comparing protein structures and origami models - Part 2. Multi-domain proteins.一种比较蛋白质结构和折纸模型的方法 - 第 2 部分。多结构域蛋白。
Biochim Biophys Acta Biomembr. 2020 Nov 1;1862(11):183411. doi: 10.1016/j.bbamem.2020.183411. Epub 2020 Jul 22.
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DNA origami protection and molecular interfacing through engineered sequence-defined peptoids.
Biomolecules. 2024 Aug 29;14(9):1083. doi: 10.3390/biom14091083.
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Studying Biomolecular Protein Complexes via Origami and 3D-Printed Models.通过折纸和 3D 打印模型研究生物分子蛋白质复合物。
Int J Mol Sci. 2024 Jul 29;25(15):8271. doi: 10.3390/ijms25158271.
通过工程序列定义的肽核酸实现 DNA 折纸保护和分子界面作用。
Proc Natl Acad Sci U S A. 2020 Mar 24;117(12):6339-6348. doi: 10.1073/pnas.1919749117. Epub 2020 Mar 12.
4
Approach for comparing protein structures and origami models.比较蛋白质结构和折纸模型的方法。
Biochim Biophys Acta Biomembr. 2020 Feb 1;1862(2):183132. doi: 10.1016/j.bbamem.2019.183132. Epub 2019 Nov 15.
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Meta-biomaterials.元生物材料。
Biomater Sci. 2019 Dec 17;8(1):18-38. doi: 10.1039/c9bm01247h.
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Rigidity percolation and geometric information in floppy origami.柔软折纸中的刚性渗流与几何信息。
Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8119-8124. doi: 10.1073/pnas.1820505116. Epub 2019 Apr 5.
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Crucial role of protein oligomerization in the pathogenesis of Alzheimer's and Parkinson's diseases.蛋白质寡聚化在阿尔茨海默病和帕金森病发病机制中的关键作用。
FEBS J. 2018 Oct;285(19):3631-3644. doi: 10.1111/febs.14587. Epub 2018 Aug 21.
8
Origami mechanologic.折纸力学。
Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):6916-6921. doi: 10.1073/pnas.1805122115. Epub 2018 Jun 18.
9
Bioinspired spring origami.仿生春卷折纸。
Science. 2018 Mar 23;359(6382):1386-1391. doi: 10.1126/science.aap7753.
10
Origami-inspired, on-demand deployable and collapsible mechanical metamaterials with tunable stiffness.折纸启发的按需可展开和可折叠机械超材料,具有可调刚度。
Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2032-2037. doi: 10.1073/pnas.1720171115. Epub 2018 Feb 12.