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至少三种基因组特征模式和至少七种新冠病毒疾病亚型的存在以及该疾病的终结

The Existence of at Least Three Genomic Signature Patterns and at Least Seven Subtypes of COVID-19 and the End of the Disease.

作者信息

Zhang Zhengjun

机构信息

Department of Statistics, University of Wisconsin, Madison, WI 53706, USA.

出版信息

Vaccines (Basel). 2022 May 11;10(5):761. doi: 10.3390/vaccines10050761.

Abstract

Hoping to find genomic clues linked to COVID-19 and end the pandemic has driven scientists' tremendous efforts to try all kinds of research. Signs of progress have been achieved but are still limited. This paper intends to prove the existence of at least three genomic signature patterns and at least seven subtypes of COVID-19 driven by five critical genes (the smallest subset of genes) using three blood-sampled datasets. These signatures and subtypes provide crucial genomic information in COVID-19 diagnosis (including ICU patients), research focuses, and treatment methods. Unlike existing approaches focused on gene fold-changes and pathways, gene-gene nonlinear and competing interactions are the driving forces in finding the signature patterns and subtypes. Furthermore, the method leads to high accuracy with hospitalized patients, showing biological and mathematical equivalences between COVID-19 status and the signature patterns and a methodological advantage over other methods that cannot lead to high accuracy. As a result, as new biomarkers, the new findings and genomic clues can be much more informative than other findings for interpreting biological mechanisms, developing the second (third) generation of vaccines, antiviral drugs, and treatment methods, and eventually bringing new hopes of an end to the pandemic.

摘要

希望找到与新冠病毒相关的基因组线索并终结这场大流行,促使科学家们付出巨大努力尝试各种研究。虽已取得一些进展迹象,但仍很有限。本文旨在利用三个血液采样数据集,证明由五个关键基因(最小基因子集)驱动的至少三种基因组特征模式以及至少七种新冠病毒亚型的存在。这些特征和亚型为新冠病毒诊断(包括重症监护病房患者)、研究重点及治疗方法提供了关键的基因组信息。与现有侧重于基因倍数变化和通路的方法不同,基因与基因之间的非线性和竞争性相互作用是发现特征模式和亚型的驱动力。此外,该方法对住院患者具有很高的准确性,显示出新冠病毒状态与特征模式之间的生物学和数学等效性,以及相对于其他无法达到高准确性的方法的方法学优势。因此,作为新的生物标志物,这些新发现和基因组线索在解释生物学机制、开发第二代(第三代)疫苗、抗病毒药物和治疗方法方面,比其他发现更具信息价值,并最终为终结这场大流行带来新的希望。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4414/9146581/b5300d0564a5/vaccines-10-00761-g001.jpg

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