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A Prognostic Signature Consisting of Pyroptosis-Related Genes and SCAF11 for Predicting Immune Response in Breast Cancer.

作者信息

Chu Ling, Yi Qiaoli, Yan Yuanliang, Peng Jinwu, Li Zhilan, Jiang Feng, He Qingchun, Ouyang Lingzi, Wu Shangjun, Fu Chencheng, Liu Ying, Xu Zhijie

机构信息

Department of Pathology, The Third Xiangya Hospital, Central South University, Changsha, China.

Department of Pharmacy, Xiangya Hospital, Central South University, Changsha, China.

出版信息

Front Med (Lausanne). 2022 May 12;9:882763. doi: 10.3389/fmed.2022.882763. eCollection 2022.


DOI:10.3389/fmed.2022.882763
PMID:35646948
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9133489/
Abstract

Pyroptosis, characterized as an inflammasome-mediated cell death pathway, may be participated in tumorigenesis and progression. However, the underlying molecular function and mechanism of pyroptosis in BRCA remain unclear. In our study, we aimed to develop a prognostic signature in BRCA based on pyroptosis-associated genes. Data was downloaded from TCGA database, and then we screened 760 female BRCA samples and 104 normal breast tissues as the training set. Seven pyroptosis-related genes (CASP9, GPX4, IL18, NLRC4, SCAF11, TIRAP, and TNF) were identified as the pyroptosis-related prognostic model for BRCA using LASSO Cox regression. We subsequently tested the prognostic value of pyroptosis-associated gene signature in a validation set, GSE 20685. Time-dependent receiver operating characteristic analysis demonstrated the credible predictive capacity of this pyroptosis-associated gene signature. The area under the curves were 0.806 at 3 years, 0.787 at 5 years, 0.775 at 8 years, and 0.793 at 10 years in the training set, and 0.824 at 5 years, 0.808 at 8 years, and 0.790 at 10 years in the validation set. Furthermore, there are currently few data on SCAF11 regulating pyroptosis. To clarify this issue, we performed integrative bioinformatics and experimental analysis. Knocking down SCAF11 possessed an anti-cancer effect in terms of inhibiting cell viability and suppressing colony-formation in functional assays. Meanwhile, the biological functions of SCAF11 in BRCA were further validated with several algorithms, such as Xiantao tool, LinkedOmics, GEPIA2, and TISIDB. These findings indicated that the expression of SCAF11 was significantly correlated with diverse tumor-infiltrating lymphocytes (TILs), including T central memory cell (Tcm), and type 2 T helper cell (Th2), etc. Functional enrichment analysis suggested that co-expression genes of SCAF11 primarily participated in inflammation and immune-related signaling pathways, such as oxidative phosphorylation, antimicrobial humoral response, and immunoglobulin complex. Moreover, SCAF11 expression was positively correlated with several immune checkpoints, including PD-L1, B7H3, and PDCD1LG2. Taken together, this study uncovered that pyroptosis-associated gene signature might be applied as an effective independent predictor in patients with BRCA. The pyroptosis-related gene SCAF11 might play potential roles in the regulation of immune microenvironment in BRCA.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/add531bd4cf3/fmed-09-882763-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/b5ef3dc2e73a/fmed-09-882763-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/d0783f7044bc/fmed-09-882763-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/5054b2d6b833/fmed-09-882763-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/77cf9dc631ff/fmed-09-882763-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/9527cf63057d/fmed-09-882763-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/5d67dd11875b/fmed-09-882763-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/274a939f7553/fmed-09-882763-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/add531bd4cf3/fmed-09-882763-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/b5ef3dc2e73a/fmed-09-882763-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/d0783f7044bc/fmed-09-882763-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/5054b2d6b833/fmed-09-882763-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/77cf9dc631ff/fmed-09-882763-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/9527cf63057d/fmed-09-882763-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/5d67dd11875b/fmed-09-882763-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/274a939f7553/fmed-09-882763-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/51b1/9133489/add531bd4cf3/fmed-09-882763-g0008.jpg

相似文献

[1]
A Prognostic Signature Consisting of Pyroptosis-Related Genes and SCAF11 for Predicting Immune Response in Breast Cancer.

Front Med (Lausanne). 2022-5-12

[2]
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[3]
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[4]
Identification and Validation of Pyroptosis-Related Gene Signature to Predict Prognosis and Reveal Immune Infiltration in Hepatocellular Carcinoma.

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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Advances in novel cell death mechanisms in breast cancer: intersecting perspectives on ferroptosis, cuproptosis, disulfidptosis, and pyroptosis.

Mol Cancer. 2025-8-27

[2]
Polyamine metabolism and immune related genes as prognostic features in breast cancer: a novel risk model approach.

Transl Cancer Res. 2025-6-30

[3]
Machine learning-based integration develops relapse related signature for predicting prognosis and indicating immune microenvironment infiltration in breast cancer.

Sci Rep. 2025-6-5

[4]
Genome-wide association study of myocarditis and pericarditis following COVID-19 vaccination.

NPJ Vaccines. 2025-5-8

[5]
Identification of pyroptosis-associated miRNAs in the immunoscape and prognosis of hepatocellular carcinoma.

BMC Cancer. 2024-12-18

[6]
C6 and KLRG2 are pyroptosis subtype-related prognostic biomarkers and correlated with tumor-infiltrating lymphocytes in lung adenocarcinoma.

Sci Rep. 2024-10-22

[7]
Upregulation of ZMAT3 is Associated with the Poor Prognosis of Breast Cancer.

Int J Gen Med. 2024-9-12

[8]
Revolutionizing breast cancer treatment: Harnessing the related mechanisms and drugs for regulated cell death (Review).

Int J Oncol. 2024-5

[9]
Immunogenic cell death-related classification reveals prognosis and effectiveness of immunotherapy in breast cancer.

Sci Rep. 2024-1-23

[10]
CRABP2 regulates infiltration of cancer-associated fibroblasts and immune response in melanoma.

Oncol Res. 2023

本文引用的文献

[1]
Pyroptosis-related molecular classification and immune microenvironment infiltration in breast cancer: A novel therapeutic target.

J Cell Mol Med. 2022-4

[2]
Pyroptosis-Related Signatures for Predicting Prognosis in Breast Cancer.

Front Surg. 2022-2-8

[3]
A novel pyroptosis-related signature predicts prognosis and response to treatment in breast carcinoma.

Aging (Albany NY). 2022-1-27

[4]
Identification and Validation of Pyroptosis-Related Gene Signature to Predict Prognosis and Reveal Immune Infiltration in Hepatocellular Carcinoma.

Front Cell Dev Biol. 2021-11-8

[5]
Molecular Characteristics, Clinical Implication, and Cancer Immunity Interactions of Pyroptosis-Related Genes in Breast Cancer.

Front Med (Lausanne). 2021-9-13

[6]
Pyroptosis at the forefront of anticancer immunity.

J Exp Clin Cancer Res. 2021-8-24

[7]
TIRAP in the Mechanism of Inflammation.

Front Immunol. 2021

[8]
Pyroptosis, a new bridge to tumor immunity.

Cancer Sci. 2021-10

[9]
A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer.

Cell Death Discov. 2021-4-7

[10]
Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.

CA Cancer J Clin. 2021-5

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