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综合生化、生理和转录组学分析为钟花报春的花芽休眠提供了见解。

Comprehensive Biochemical, Physiological, and Transcriptomic Analyses Provide Insights Into Floral Bud Dormancy in Franch.

作者信息

Zhang Lu, Song Jie, Peng Lvchun, Xie Weijia, Li Shifeng, Wang Jihua

机构信息

Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming, China.

National Engineering Research Center for Ornamental Horticulture, Kunming, China.

出版信息

Front Genet. 2022 May 17;13:856922. doi: 10.3389/fgene.2022.856922. eCollection 2022.

Abstract

Due to a scarcity of relevant data, the ornamental woody flower Franch. is examined in the current study for its low temperature-induced floral bud dormancy (late October-end December) aspect. This study used transcriptome data profiling and co-expression network analyses to identify the interplay between endogenous hormones and bud dormancy phases such as pre-dormancy, para-dormancy, endo-dormancy, eco-dormancy, and dormancy release. The biochemical and physiological assays revealed the significance of the abundance of phytohormones (abscisic acid, auxin, zeatin, and gibberellins), carbohydrate metabolism, oxidative species, and proteins (soluble proteins, proline, and malondialdehyde) in the regulatory mechanism of floral bud dormancy. The transcriptome sequencing generated 65,531 transcripts, out of which 504, 514, 307, and 240 expressed transcripts were mapped uniquely to pre-, para-, endo-, and eco-phases of dormancy, showing their roles in the stimulation of dormancy. The transcripts related to , , family, , , , , , , and were identified as potential structural genes involved in floral bud dormancy. The transcription factors, including , , family, , and revealed their potential regulatory roles concerning floral bud dormancy The gene co-expression analysis highlighted essential hub genes involved in cold stress adaptations encoding proteins, , , , , , , , and . We exposed the connection among low temperature-induced dormancy in floral buds, differentially expressed genes, and hub genes strict screening steps to escalate the confidence in selected genes as being truly putative in the pathways regulating bud dormancy mechanism. The identified candidate genes may prove worthy of further in-depth studies on molecular mechanisms involved in floral bud dormancy of species.

摘要

由于相关数据稀缺,本研究对观赏木本花卉 Franch. 低温诱导花芽休眠(10 月底至 12 月底)方面进行了研究。本研究利用转录组数据剖析和共表达网络分析,以确定内源激素与花芽休眠阶段(如预休眠、旁休眠、内休眠、生态休眠和休眠解除)之间的相互作用。生化和生理分析揭示了植物激素(脱落酸、生长素、玉米素和赤霉素)丰度、碳水化合物代谢、氧化物质和蛋白质(可溶性蛋白质、脯氨酸和丙二醛)在花芽休眠调控机制中的重要性。转录组测序产生了 65,531 个转录本,其中 504、514、307 和 240 个表达的转录本分别唯一映射到休眠的预、旁、内和生态阶段,显示了它们在诱导休眠中的作用。与 、 家族、 、 、 、 、 、 和 相关的转录本被鉴定为参与花芽休眠的潜在结构基因。转录因子,包括 、 家族、 和 揭示了它们在花芽休眠方面的潜在调控作用。基因共表达分析突出了参与冷应激适应的关键枢纽基因,这些基因编码蛋白质 、 、 、 、 、 、 、 和 。我们通过严格的筛选步骤揭示了低温诱导花芽休眠、差异表达基因和枢纽基因之间的联系,以提高对所选基因在调控芽休眠机制途径中真正假定作用的信心。所鉴定的候选基因可能值得进一步深入研究 物种花芽休眠所涉及的分子机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d082/9152171/b99f8ea944ea/fgene-13-856922-g001.jpg

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