Wang Zhen, Yang Han, Luo Bin, Duan Pengfei, Lin Peng
Department of Thoracic Oncology, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, China.
Front Genet. 2022 May 18;13:805256. doi: 10.3389/fgene.2022.805256. eCollection 2022.
Malignant pleural mesothelioma (MPM) is a malignant tumor originating from pleural mesothelial cells and has a high mortality rate worldwide. With the advent of immunotherapy in MPM treatment, there is an urgent need to elucidate the immune-related mechanisms in this caner. Single-sample gene set enrichment analysis (ssGSEA) was used to score the immunocytes infiltration of data from different database sources. Identification of immunocyte-related genes was performed with weighted gene co-expression network analysis (WGCNA), differentially expressed genes (DEGs) analysis, and correlation analysis. Pan-caner analysis was performed using "DiffExp" and "Correlation" modules in TIMER. T-helper 2 (Th2) cell was found to be a poor prognostic factor for patients with MPM. Then a transcription factor, NFE2L3, was identified as a biomarker that showed a strong positive correlation with Th2 cell infiltration, and was highly expressed in MPM tissues and was related to the poor prognosis of these patients. At the same time, multiple NFE2L3 methylation sites were negatively correlated with Th2 cell infiltration, and patients with a high degree of methylation enjoy a better prognosis. Pan-caner analysis indicated that NFE2L3 might promote the differentiation of Th2 cells through the IL-2/STAT5/NLRP3 signaling pathway in MPM and many other cancers. We believe that NFE2L3 can serve as a potential biomarker related to the diagnosis and prognosis of patients with MPM, and speculate that NFE2L3 could promote Th2 cell differentiation IL-2/STAT5/NLRP3 signaling pathway in MPM and many other cancers.
恶性胸膜间皮瘤(MPM)是一种起源于胸膜间皮细胞的恶性肿瘤,在全球范围内具有较高的死亡率。随着免疫疗法在MPM治疗中的出现,迫切需要阐明这种癌症中与免疫相关的机制。单样本基因集富集分析(ssGSEA)用于对来自不同数据库来源的数据中的免疫细胞浸润进行评分。使用加权基因共表达网络分析(WGCNA)、差异表达基因(DEG)分析和相关性分析来鉴定免疫细胞相关基因。使用TIMER中的“DiffExp”和“Correlation”模块进行泛癌分析。发现辅助性T细胞2(Th2)是MPM患者的不良预后因素。然后,一种转录因子NFE2L3被鉴定为一种生物标志物,它与Th2细胞浸润呈强正相关,在MPM组织中高表达,并且与这些患者的不良预后相关。同时,多个NFE2L3甲基化位点与Th2细胞浸润呈负相关,甲基化程度高的患者预后较好。泛癌分析表明,NFE2L3可能通过IL-2/STAT5/NLRP3信号通路促进MPM和许多其他癌症中Th2细胞的分化。我们认为,NFE2L3可以作为与MPM患者诊断和预后相关的潜在生物标志物,并推测NFE2L3可能通过IL-2/STAT5/NLRP3信号通路促进MPM和许多其他癌症中Th2细胞的分化。