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HyperGraphs.jl:在 Julia 中表示高阶关系。

HyperGraphs.jl: representing higher-order relationships in Julia.

机构信息

Melbourne Integrative Genomics and School of Mathematics and Statistics, University of Melbourne, Melbourne, Parkville, VIC 3010, Australia.

School of BioSciences, University of Melbourne, Melbourne, Parkville, VIC 3010, Australia.

出版信息

Bioinformatics. 2022 Jul 11;38(14):3660-3661. doi: 10.1093/bioinformatics/btac347.

Abstract

SUMMARY

HyperGraphs.jl is a Julia package that implements hypergraphs. These are a generalization of graphs that allow us to represent n-ary relationships and not just binary, pairwise relationships. High-order interactions are commonplace in biological systems and are of critical importance to their dynamics; hypergraphs thus offer a natural way to accurately describe and model these systems.

AVAILABILITY AND IMPLEMENTATION

HyperGraphs.jl is freely available under the MIT license. Source code and documentation can be found at https://github.com/lpmdiaz/HyperGraphs.jl.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

摘要

HyperGraphs.jl 是一个 Julia 包,它实现了超图。超图是图的推广,它允许我们表示 n 元关系,而不仅仅是二元、成对关系。高阶相互作用在生物系统中很常见,对它们的动态至关重要;因此,超图为准确描述和建模这些系统提供了一种自然的方式。

可用性和实现

HyperGraphs.jl 根据麻省理工学院的许可证免费提供。源代码和文档可在 https://github.com/lpmdiaz/HyperGraphs.jl 找到。

补充信息

补充数据可在 Bioinformatics 在线获得。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3835/9326852/762c6734ac7b/btac347f1.jpg

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