MOE Key Laboratory of Smart Manufacturing in Energy Chemical Process, East China University of Science and Technology, Shanghai, China.
School of Biological Sciences, The University of Edinburgh, Edinburgh, UK.
Bioinformatics. 2022 Sep 2;38(17):4243-4245. doi: 10.1093/bioinformatics/btac472.
DelaySSAToolkit.jl is a Julia package for modelling reaction systems with non-Markovian dynamics, specifically those with time delays. These delays implicitly capture multiple intermediate reaction steps and hence serve as an effective model reduction technique for complex systems in biology, chemistry, ecology and genetics. The package implements a variety of exact formulations of the delay stochastic simulation algorithm.
The source code and documentation of DelaySSAToolkit.jl are available at https://github.com/palmtree2013/DelaySSAToolkit.jl.
DelaySSAToolkit.jl 是一个用于对具有非马尔可夫动力学的反应系统进行建模的 Julia 包，特别是那些具有时间延迟的系统。这些延迟隐式地捕获了多个中间反应步骤，因此是生物学、化学、生态学和遗传学中复杂系统的有效模型简化技术。该包实现了延迟随机模拟算法的多种精确公式。
DelaySSAToolkit.jl 的源代码和文档可在 https://github.com/palmtree2013/DelaySSAToolkit.jl 上获得。
