Rahnamoun Ali, O'Hearn Kurt A, Kaymak Mehmet Cagri, Li Zhen, Merz Kenneth M, Aktulga Hasan Metin
Department of Chemistry and Department of Biochemistry and Molecular Biology, Michigan State University, 578 South Shaw Lane, East Lansing, Michigan 48824-1322, United States.
Department of Computer Science and Engineering, Michigan State University, 428 South Shaw Lane, East Lansing, Michigan 48824-1322, United States.
J Phys Chem Lett. 2022 Jun 8:5334-5340. doi: 10.1021/acs.jpclett.2c01279.
A novel locally polarizable multisite model based on the original cation dummy atom (CDA) model is described for molecular dynamics simulations of ions in condensed phases. Polarization effects are introduced by the electronegativity equalization model (EEM) method where charges on the metal ion and its dummy atoms can fluctuate to respond to the environment. This model includes explicit polarization and ion-induced interactions and can be coupled with nonpolarizable or polarizable water models, making it more transferable to simpler force fields. This approach allows us to enhance the original fixed charge CDA model where the charge distribution cannot adapt to the local solvent structure. To illustrate the new CDA model, we examined properties of the Zn, Al, and Zr ions in aqueous solution. The polarizable model and Lennard-Jones parameters were refined for octahedrally coordinated Zn, Al, and Zr CDAs to reproduce thermodynamic and geometrical properties. Using this locally polarizable model, we were able to obtain the experimental hydration free energy, ion-oxygen distance, and coordination number coupled with the standard 12-6 Lennard-Jones model. This model can be used in myriad additional applications where local polarization and charge transfer is important.
本文描述了一种基于原始阳离子虚拟原子(CDA)模型的新型局部可极化多位点模型,用于凝聚相中离子的分子动力学模拟。极化效应通过电负性均衡模型(EEM)方法引入,其中金属离子及其虚拟原子上的电荷可以波动以响应环境。该模型包括显式极化和离子诱导相互作用,并且可以与非极化或极化水模型耦合,使其更易于转移到更简单的力场。这种方法使我们能够改进原始的固定电荷CDA模型,在该模型中电荷分布无法适应局部溶剂结构。为了说明新的CDA模型,我们研究了水溶液中Zn、Al和Zr离子的性质。针对八面体配位的Zn、Al和Zr CDA,对可极化模型和 Lennard-Jones 参数进行了优化,以重现热力学和几何性质。使用这种局部可极化模型,我们能够结合标准的12-6 Lennard-Jones模型获得实验水化自由能、离子-氧距离和配位数。该模型可用于许多其他局部极化和电荷转移很重要的应用中。