Cano Marco, Tsueng Ginger, Zhou Xinghua, Hughes Laura D, Mullen Julia L, Xin Jiwen, Su Andrew I, Wu Chunlei
bioRxiv. 2022 Jun 2:2021.09.02.458726. doi: 10.1101/2021.09.02.458726.
Biomedical researchers are strongly encouraged to make their research outputs more Findable, Accessible, Interoperable, and Reusable (FAIR). While many biomedical research outputs are more readily accessible through open data efforts, finding relevant outputs remains a significant challenge. Schema.org is a metadata vocabulary standardization project that enables web content creators to make their content more FAIR. Leveraging schema.org could benefit biomedical research resource providers, but it can be challenging to apply schema.org standards to biomedical research outputs. We created an online browser-based tool that empowers researchers and repository developers to utilize schema.org or other biomedical schema projects.
Our browser-based tool includes features which can help address many of the barriers towards schema.org -compliance such as: The ability to easily browse for relevant schema.org classes, the ability to extend and customize a class to be more suitable for biomedical research outputs, the ability to create data validation to ensure adherence of a research output to a customized class, and the ability to register a custom class to our schema registry enabling others to search and re-use it. We demonstrate the use of our tool with the creation of the Outbreak.info schemaâ€"a large multi-class schema for harmonizing various COVID-19 related resources.
We have created a browser-based tool to empower biomedical research resource providers to leverage schema.org classes to make their research outputs more FAIR.
强烈鼓励生物医学研究人员使其研究成果更具可查找性、可访问性、互操作性和可重用性(FAIR)。虽然通过开放数据努力,许多生物医学研究成果更容易获取,但找到相关成果仍然是一项重大挑战。Schema.org是一个元数据词汇标准化项目,它使网页内容创作者能够使其内容更符合FAIR原则。利用Schema.org可能会使生物医学研究资源提供者受益,但将Schema.org标准应用于生物医学研究成果可能具有挑战性。我们创建了一个基于浏览器的在线工具,使研究人员和存储库开发人员能够利用Schema.org或其他生物医学模式项目。
我们基于浏览器的工具包括一些功能,这些功能可以帮助解决许多与Schema.org合规相关的障碍,例如:能够轻松浏览相关的Schema.org类,能够扩展和自定义类以更适合生物医学研究成果,能够创建数据验证以确保研究成果符合自定义类,以及能够将自定义类注册到我们的模式注册表中,使其他人能够搜索和重新使用它。我们通过创建Outbreak.info模式展示了我们工具的使用——这是一个用于协调各种与COVID-19相关资源的大型多类模式。
我们创建了一个基于浏览器的工具,以使生物医学研究资源提供者能够利用Schema.org类,使其研究成果更符合FAIR原则。