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撒丁岛的豆科植物:关于共生细菌和内生细菌的知识以及用于植物物种鉴定的交互式软件工具。

Legumes of the Sardinia Island: Knowledge on Symbiotic and Endophytic Bacteria and Interactive Software Tool for Plant Species Determination.

作者信息

Muresu Rosella, Porceddu Andrea, Concheri Giuseppe, Stevanato Piergiorgio, Squartini Andrea

机构信息

Institute for the Animal Production System in Mediterranean Environment-National Research Council (ISPAAM CNR), Traversa La Crucca 3, 07100 Sassari, SS, Italy.

Department of Agriculture, University of Sassari, Viale Italia 1, 07100 Sassari, SS, Italy.

出版信息

Plants (Basel). 2022 Jun 6;11(11):1521. doi: 10.3390/plants11111521.

Abstract

A meta-analysis was carried out on published literature covering the topic of interactive plant microbiology for botanical species of legumes occurring within the boundary of the Italian island Sardinia, lying between the Tyrrhenian and the western Mediterranean seas. Reports were screened for the description of three types of bacterial occurrences; namely, (a) the nitrogen-fixing symbionts dwelling in root nodules; (b) other bacteria co-hosted in nodules but having the ancillary nature of endophytes; (c) other endophytes isolated from different non-nodular portions of the legume plants. For 105 plant species or subspecies, over a total of 290 valid taxonomical descriptions of bacteria belonging to either one or more of these three categories were found, yielding 85 taxa of symbionts, 142 taxa of endophytes in nodules, and 33 in other plant parts. The most frequent cases were within the , , , and genera, the majority of symbionts belonged to the , , and taxa. Both nodular and extra-nodular endophytes were highly represented by Gammaproteobacteria (, , ) and Firmicutes (, ), along with a surprisingly high diversity of the Actinobacteria genus . The most plant-promiscuous bacteria were as symbiont and as endophyte. In addition to the microbial analyses we introduce a practical user-friendly software tool for plant taxonomy determination working in a Microsoft Excel spreadsheet that we have purposely elaborated for the classification of legume species of Sardinia. Its principle is based on subtractive keys that progressively filter off the plants that do not comply with the observed features, eventually leaving only the name of the specimen under examination.

摘要

对已发表的文献进行了一项荟萃分析,这些文献涵盖了位于第勒尼安海和西地中海之间的意大利撒丁岛范围内豆科植物的交互式植物微生物学主题。筛选报告以描述三种细菌出现情况;即,(a) 生活在根瘤中的固氮共生体;(b) 共同存在于根瘤中但具有内生菌辅助性质的其他细菌;(c) 从豆科植物不同非根瘤部分分离出的其他内生菌。对于105种植物物种或亚种,总共发现了290条属于这三类中的一类或多类的细菌有效分类描述,产生了85个共生体分类单元、142个根瘤内生菌分类单元和33个其他植物部位的分类单元。最常见的情况出现在 、 、 、 和 属中,大多数共生体属于 、 、 和 分类单元。根瘤内生菌和非根瘤内生菌在γ-变形菌纲( 、 、 )和厚壁菌门( 、 )中占比很高,同时放线菌属 的多样性也惊人地高。最具植物通用性的细菌是作为共生体的 和作为内生菌的 。除了微生物分析外,我们还引入了一个实用的用户友好型软件工具,用于在Microsoft Excel电子表格中进行植物分类确定,该工具是我们专门为撒丁岛豆科植物的分类精心制作的。其原理基于减法检索表,逐步筛选出不符合观察到特征的植物,最终只留下被检查标本的名称。

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