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基于糖酵解相关基因预后风险模型预测肺腺癌患者治疗反应和生存时间的差异

Predicting Differences in Treatment Response and Survival Time of Lung Adenocarcinoma Patients Based on a Prognostic Risk Model of Glycolysis-Related Genes.

作者信息

Zhao Rongchang, Ding Dan, Ding Yan, Han Rongbo, Wang Xiujuan, Zhu Chunrong

机构信息

Department of Oncology, Taixing People's Hospital Affiliated to Bengbu Medical College, Taixing, China.

Department of Intensive Care Unit, Taixing People's Hospital Affiliated to Bengbu Medical College, Taixing, China.

出版信息

Front Genet. 2022 May 25;13:828543. doi: 10.3389/fgene.2022.828543. eCollection 2022.

Abstract

Multiple factors influence the survival of patients with lung adenocarcinoma (LUAD). Specifically, the therapeutic outcomes of treatments and the probability of recurrence of the disease differ among patients with the same stage of LUAD. Therefore, effective prognostic predictors need to be identified. Based on the tumor mutation burden (TMB) data obtained from The Cancer Genome Atlas (TCGA) database, LUAD patients were divided into high and low TMB groups, and differentially expressed glycolysis-related genes between the two groups were screened. The least absolute shrinkage and selection operator (LASSO) and Cox regression were used to obtain a prognostic model. A receiver operating characteristic (ROC) curve and a calibration curve were generated to evaluate the nomogram that was constructed based on clinicopathological characteristics and the risk score. Two data sets (GSE68465 and GSE11969) from the Gene Expression Omnibus (GEO) were used to verify the prognostic performance of the gene. Furthermore, differences in immune cell distribution, immune-related molecules, and drug susceptibility were assessed for their relationship with the risk score. We constructed a 5-gene signature (FKBP4, HMMR, B4GALT1, SLC2A1, STC1) capable of dividing patients into two risk groups. There was a significant difference in overall survival (OS) times between the high-risk group and the low-risk group ( < 0.001), with the low-risk group having a better survival outcome. Through multivariate Cox analysis, the risk score was confirmed to be an independent prognostic factor (HR = 2.709, 95% CI = 1.981-3.705, < 0.001), and the ROC curve and nomogram exhibited accurate prediction performance. Validation of the data obtained in the GEO database yielded similar results. Furthermore, there were significant differences in sensitivity to immunotherapy, cisplatin, paclitaxel, gemcitabine, docetaxel, gefitinib, and erlotinib between the low-risk and high-risk groups. Our results reveal that glycolysis-related genes are feasible predictors of survival and the treatment response of patients with LUAD.

摘要

多种因素影响肺腺癌(LUAD)患者的生存。具体而言,相同分期的LUAD患者,其治疗效果和疾病复发概率存在差异。因此,需要确定有效的预后预测指标。基于从癌症基因组图谱(TCGA)数据库获得的肿瘤突变负荷(TMB)数据,将LUAD患者分为高TMB组和低TMB组,并筛选两组之间差异表达的糖酵解相关基因。使用最小绝对收缩和选择算子(LASSO)和Cox回归获得预后模型。生成受试者工作特征(ROC)曲线和校准曲线,以评估基于临床病理特征和风险评分构建的列线图。使用来自基因表达综合数据库(GEO)的两个数据集(GSE68465和GSE11969)验证该基因的预后性能。此外,评估免疫细胞分布、免疫相关分子和药物敏感性的差异与风险评分的关系。我们构建了一个能够将患者分为两个风险组的5基因特征(FKBP4、HMMR、B4GALT1、SLC2A1、STC1)。高风险组和低风险组的总生存(OS)时间存在显著差异(<0.001),低风险组的生存结果更好。通过多变量Cox分析,风险评分被确认为独立的预后因素(HR = 2.709,95%CI = 1.981 - 3.705,<0.001),ROC曲线和列线图表现出准确的预测性能。在GEO数据库中获得的数据验证产生了相似的结果。此外,低风险组和高风险组在对免疫治疗、顺铂、紫杉醇、吉西他滨、多西他赛、吉非替尼和厄洛替尼的敏感性方面存在显著差异。我们的结果表明,糖酵解相关基因是LUAD患者生存和治疗反应的可行预测指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65bf/9174756/e482a2cfe8e3/fgene-13-828543-g001.jpg

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