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病例报告:因错义突变导致Ⅰ型巴德-比德尔综合征(BBS1)的致病异常剪接的鉴定

Case Report: Identification Pathogenic Abnormal Splicing of Causing Bardet-Biedl Syndrome Type I (BBS1) due to Missense Mutation.

作者信息

Yan Kai, Sun Yixi, Yang Yanmei, Liu Bei, Dong Minyue

机构信息

Department of Reproductive Genetics, Women's Hospital, School of Medicine, Zhejiang University, Hangzhou, China.

Key Laboratory of Reproductive Genetics (Zhejiang University), Ministry of Education, Hangzhou, China.

出版信息

Front Genet. 2022 May 27;13:849562. doi: 10.3389/fgene.2022.849562. eCollection 2022.

DOI:10.3389/fgene.2022.849562
PMID:35692835
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9186647/
Abstract

Conventionally, protein features affected by missense mutation was attributed to destroy an important domain with amino acid alternation, and it was difficult to clearly specify the pathogenicity of a novel missense mutation. Nevertheless, the associations between missense mutations and abnormal splicing are nowadays increasingly reported. Rarely, some missense mutations, locating at the non-canonical splicing sites, are observed to damage the splicing process. In this study, a couple has three adverse pregnancy history that the affected fetus presented typical polydactyly, renal abnormalities, and cerebral ventriculomegaly. To identify its genetic etiology, whole-exome sequencing (WES) was performed and a missense mutation c.1339G > A was identified, which was located at the non-canonical splicing sites of the gene. Then, reverse transcription polymerase chain reaction was carried out and demonstrated extra 115bp originating from intron 13 cut into cDNA, which generated a predicted premature termination codon (PTC) in the BBS1 protein. Further expression analysis by using real-time reverse-transcribed PCR confirmed the occurrence of nonsense-mediated decay (NMD). Therefore, the pathogenicity of the missense mutation c.1339G > A was explicit and our study helped to extend the spectrum of pathogenic mutations in Bardet-Biedl syndrome type I.

摘要

传统上,错义突变影响的蛋白质特征被归因于氨基酸改变破坏了一个重要结构域,并且很难明确确定一个新错义突变的致病性。然而,如今错义突变与异常剪接之间的关联报道越来越多。罕见的是,一些位于非经典剪接位点的错义突变被观察到会损害剪接过程。在本研究中,一对夫妇有三次不良妊娠史,受影响的胎儿表现出典型的多指畸形、肾脏异常和脑室扩大。为了确定其遗传病因,进行了全外显子组测序(WES),并鉴定出一个错义突变c.1339G > A,其位于该基因的非经典剪接位点。然后,进行逆转录聚合酶链反应,结果显示有额外的115bp来自内含子13被剪接到cDNA中,这在BBS1蛋白中产生了一个预测的提前终止密码子(PTC)。通过实时逆转录PCR进行的进一步表达分析证实了无义介导的衰变(NMD)的发生。因此,错义突变c.1339G > A的致病性明确,我们的研究有助于扩展I型巴德-比埃尔综合征致病突变的谱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/193806c67dc1/fgene-13-849562-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/2c3ff1b4a1c5/fgene-13-849562-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/a427f9ce0ebe/fgene-13-849562-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/193806c67dc1/fgene-13-849562-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/2c3ff1b4a1c5/fgene-13-849562-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/a427f9ce0ebe/fgene-13-849562-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/939c/9186647/193806c67dc1/fgene-13-849562-g003.jpg

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Whole-exome sequencing in the evaluation of fetal structural anomalies: a prospective cohort study.
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Lancet. 2019 Feb 23;393(10173):758-767. doi: 10.1016/S0140-6736(18)32042-7. Epub 2019 Jan 31.
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Genetic analysis of osteogenesis imperfecta in the Palestinian population: molecular screening of 49 affected families.巴勒斯坦人群成骨不全症的基因分析:对49个患病家庭的分子筛查
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