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生物信息学分析揭示miR-17-5p是与铁死亡相关的肺腺癌脑转移的潜在驱动因素。

miR-17-5p/ Is a Potential Driver for Brain Metastasis of Lung Adenocarcinoma Related to Ferroptosis Revealed by Bioinformatic Analysis.

作者信息

Chen Quanfang, Pan Qingyun, Gao Han, Wang Yingju, Zhong Xiaoning

机构信息

Department of Respiratory Medicine, First Affiliated Hospital of Guangxi Medical University, Nanning, China.

出版信息

Front Neurol. 2022 May 25;13:878947. doi: 10.3389/fneur.2022.878947. eCollection 2022.

Abstract

OBJECTIVES

Present study aims to identify the essential mRNAs responsible for the development of brain neurovascular-related metastases (BNM) among lung adenocarcinoma (LUAD) patients. Further, we attempted to predict brain metastases more accurately and prevent their development in LUAD patients.

METHODS

Transcriptome data analysis was used to identify differentially expressed mRNAs (DEMs) associated with brain metastasis, and thereby the ferroptosis index (FPI) is calculated using a computational model. Meanwhile, the DEmRNAs linked with FPI, and brain metastasis were derived by the intersection of these two groups of DEMs. We also constructed a ceRNA network containing these DEmRNAs, identifying the /hsa-miR-17-5p/ axis for analysis. Further, a clinical cohort was employed to validate the regulatory roles of molecules involved in the ceRNA regulatory axis.

RESULTS

Here we report the development of a ceRNA network based on BNM-associated DEMs and FPI-associated DEmRNAs which includes three core miRNAs (hsa-miR-338-3p, hsa-miR-429, and hsa-miR-17-5p), three mRNAs (, and ), and five lncRNAs (). Using gene set enrichment analysis (GSEA) and survival analysis, the potential axis of /hsa-miR-17-5p/ was further investigated. It is found that and ferroptosis index are positively correlated while inhibiting tumor brain metastasis. It may be that binds competitively with miR-17-5p and upregulates to increase iron death limiting brain cancer metastases.

CONCLUSIONS

The expression of both and is positively correlated with FPI, indicating a possible link between ferroptosis and BNM. According to the results of our study, the ferroptosis-related ceRNA /hsa-miR-17-5p/ axis may contribute to the development of BNM in LUAD patients.

摘要

目的

本研究旨在确定肺腺癌(LUAD)患者中与脑神经血管相关转移(BNM)发生相关的关键mRNA。此外,我们试图更准确地预测脑转移,并预防LUAD患者发生脑转移。

方法

采用转录组数据分析来鉴定与脑转移相关的差异表达mRNA(DEM),进而使用计算模型计算铁死亡指数(FPI)。同时,通过这两组DEM的交集得出与FPI和脑转移相关的DEmRNA。我们还构建了包含这些DEmRNA的ceRNA网络,确定了/hsa-miR-17-5p/轴进行分析。此外,采用临床队列来验证ceRNA调控轴中相关分子的调控作用。

结果

在此,我们报告基于与BNM相关的DEM和与FPI相关的DEmRNA构建的ceRNA网络的构建情况,该网络包括三个核心miRNA(hsa-miR-338-3p、hsa-miR-429和hsa-miR-17-5p)、三个mRNA(和)以及五个lncRNA()。使用基因集富集分析(GSEA)和生存分析,进一步研究了/hsa-miR-17-5p/的潜在轴。发现与铁死亡指数呈正相关,同时抑制肿瘤脑转移。可能是与miR-17-5p竞争性结合并上调,从而增加铁死亡以限制脑癌转移。

结论

和的表达均与FPI呈正相关,表明铁死亡与BNM之间可能存在联系。根据我们的研究结果,铁死亡相关的ceRNA/hsa-miR-17-5p/轴可能在LUAD患者BNM的发生中起作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f9b/9174431/fe36fd0fb2c3/fneur-13-878947-g0001.jpg

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