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A novel immunogenomic signature to predict prognosis and reveal immune infiltration characteristics in pancreatic ductal adenocarcinoma.

作者信息

Li Ang, Ye Bicheng, Lin Fangnan, Wang Yilin, Miao Xiaye, Jiang Yanfang

机构信息

Key Laboratory of Organ Regeneration & Transplantation of the Ministry of Education, Genetic Diagnosis Center, The First Hospital of Jilin University, Changchun 130021, China.

School of Clinical Medicine, Medical College of Yangzhou Polytechnic College, Yangzhou 225100, China.

出版信息

Precis Clin Med. 2022 Apr 25;5(2):pbac010. doi: 10.1093/pcmedi/pbac010. eCollection 2022 Jun.


DOI:10.1093/pcmedi/pbac010
PMID:35694712
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9172649/
Abstract

BACKGROUND: The immune response in the tumor microenvironment (TME) plays a crucial role in cancer progression and recurrence. We aimed to develop an immune-related gene (IRG) signature to improve prognostic predictive power and reveal the immune infiltration characteristics of pancreatic ductal adenocarcinoma (PDAC). METHODS: The Cancer Genome Atlas (TCGA) PDAC was used to construct a prognostic model as a training cohort. The International Cancer Genome Consortium (ICGC) and the Gene Expression Omnibus (GEO) databases were set as validation datasets. Prognostic genes were screened by using univariate Cox regression. Then, a novel optimal prognostic model was developed by using least absolute shrinkage and selection operator (LASSO) Cox regression. Cell type identification by estimating the relative subsets of RNA transcripts (CIBERSORT) and estimation of stromal and immune cells in malignant tumors using expression data (ESTIMATE) algorithms were used to characterize tumor immune infiltrating patterns. The tumor immune dysfunction and exclusion (TIDE) algorithm was used to predict immunotherapy responsiveness. RESULTS: A prognostic signature based on five IRGs (, and ) was constructed in TCGA-PDAC and comprehensively validated in ICGC and GEO cohorts. Multivariate Cox regression analysis demonstrated that this signature had an independent prognostic value. The area under the curve (AUC) values of the receiver operating characteristic (ROC) curve at 1, 3, and 5 years of survival were 0.724, 0.702, and 0.776, respectively. We further demonstrated that our signature has better prognostic performance than recently published ones and is superior to traditional clinical factors such as grade and tumor node metastasis classification (TNM) stage in predicting survival. Moreover, we found higher abundance of CD8+ T cells and lower M2-like macrophages in the low-risk group of TCGA-PDAC, and predicted a higher proportion of immunotherapeutic responders in the low-risk group. CONCLUSIONS: We constructed an optimal prognostic model which had independent prognostic value and was comprehensively validated in external PDAC databases. Additionally, this five-genes signature could predict immune infiltration characteristics. Moreover, the signature helped stratify PDAC patients who might be more responsive to immunotherapy.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/c7f831285541/pbac010fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/82074e4b4d97/pbac010fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/3307e5ffbba0/pbac010fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/5a89816b91d4/pbac010fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/4541c3394a15/pbac010fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/c7f831285541/pbac010fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/82074e4b4d97/pbac010fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/3307e5ffbba0/pbac010fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/5a89816b91d4/pbac010fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/4541c3394a15/pbac010fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1748/9172649/c7f831285541/pbac010fig5.jpg

相似文献

[1]
A novel immunogenomic signature to predict prognosis and reveal immune infiltration characteristics in pancreatic ductal adenocarcinoma.

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[2]
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本文引用的文献

[1]
Pancreatic Ductal Adenocarcinoma: Preclinical and Models.

Front Cell Dev Biol. 2021-10-22

[2]
Identification of a Five-Gene Prognostic Signature Related to B Cells Infiltration in Pancreatic Adenocarcinoma.

Int J Gen Med. 2021-8-30

[3]
Analysis of Immune-Related Signatures Related to CD4+ T Cell Infiltration With Gene Co-Expression Network in Pancreatic Adenocarcinoma.

Front Oncol. 2021-7-23

[4]
Construction and Validation of an Immune-Based Prognostic Model for Pancreatic Adenocarcinoma Based on Public Databases.

Front Genet. 2021-7-14

[5]
Identification of an Immune-Related Signature for Predicting Prognosis in Patients With Pancreatic Ductal Adenocarcinoma.

Front Oncol. 2021-2-24

[6]
Composition, Spatial Characteristics, and Prognostic Significance of Myeloid Cell Infiltration in Pancreatic Cancer.

Clin Cancer Res. 2021-2-15

[7]
The history and advances in cancer immunotherapy: understanding the characteristics of tumor-infiltrating immune cells and their therapeutic implications.

Cell Mol Immunol. 2020-8

[8]
Lung Tumor Cell-Derived Exosomes Promote M2 Macrophage Polarization.

Cells. 2020-5-24

[9]
TNFSF9 Is a Prognostic Biomarker and Correlated with Immune Infiltrates in Pancreatic Cancer.

J Gastrointest Cancer. 2021-3

[10]
The Tumor Microenvironment in Colorectal Cancer Therapy.

Cancers (Basel). 2019-8-14

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