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本文引用的文献

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Anthropogenic Disturbances Eroding the Genetic Diversity of a Threatened Palm Tree: A Multiscale Approach.人为干扰侵蚀受威胁棕榈树的遗传多样性:一种多尺度方法。
Front Genet. 2019 Nov 7;10:1090. doi: 10.3389/fgene.2019.01090. eCollection 2019.
2
Ecological niche modeling and a lack of phylogeographic structure in Vriesea incurvata suggest historically stable areas in the southern Atlantic Forest.生态位模型和卷曲凤梨(Vriesea incurvata)缺乏系统地理学结构表明,南大西洋森林历史上一直保持稳定。
Am J Bot. 2019 Jul;106(7):971-983. doi: 10.1002/ajb2.1317. Epub 2019 Jun 27.
3
StrAuto: automation and parallelization of STRUCTURE analysis.StrAuto:STRUCTURE分析的自动化与并行化
BMC Bioinformatics. 2017 Mar 24;18(1):192. doi: 10.1186/s12859-017-1593-0.
4
Genetic diversity and structure of wild populations of Carica papaya in Northern Mesoamerica inferred by nuclear microsatellites and chloroplast markers.利用核微卫星和叶绿体标记推断中美洲北部番木瓜野生种群的遗传多样性和结构
Ann Bot. 2016 Dec;118(7):1293-1306. doi: 10.1093/aob/mcw183. Epub 2016 Oct 6.
5
Defaunation leads to microevolutionary changes in a tropical palm.去(无)蜂化导致热带棕榈发生微进化改变。
Sci Rep. 2016 Aug 18;6:31957. doi: 10.1038/srep31957.
6
Contemporary and historic factors influence differently genetic differentiation and diversity in a tropical palm.当代和历史因素对热带棕榈的遗传分化和多样性有不同的影响。
Heredity (Edinb). 2015 Sep;115(3):216-24. doi: 10.1038/hdy.2015.30. Epub 2015 Apr 15.
7
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.Clumpak:一个用于识别聚类模式并整合K值范围内群体结构推断结果的程序。
Mol Ecol Resour. 2015 Sep;15(5):1179-91. doi: 10.1111/1755-0998.12387. Epub 2015 Feb 27.
8
Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species.从多模型推断中恢复物种种群历史:以一种新热带稀树草原树种为例。
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9
Prediction of phylogeographic endemism in an environmentally complex biome.环境复杂生物群落中系统发育地理学特有性的预测
Proc Biol Sci. 2014 Oct 7;281(1792). doi: 10.1098/rspb.2014.1461.
10
Low plant density enhances gene dispersal in the Amazonian understory herb Heliconia acuminata.低植物密度会增强亚马逊林下草本植物弯嘴鹤蕉的基因扩散。
Mol Ecol. 2013 Nov;22(22):5716-29. doi: 10.1111/mec.12495.

巴西大西洋森林受威胁棕榈物种(Euterpe edulis Arecaceae)的遗传多样性和结构模式。

Patterns of genetic diversity and structure of a threatened palm species (Euterpe edulis Arecaceae) from the Brazilian Atlantic Forest.

机构信息

Department of Agronomy, Universidade Federal do Espírito Santo, Alegre, Brazil.

Department of Biological Sciences, Universidade Estadual de Santa Cruz, Ilhéus, Bahia, Brazil.

出版信息

Heredity (Edinb). 2022 Sep;129(3):161-168. doi: 10.1038/s41437-022-00549-7. Epub 2022 Jun 13.

DOI:10.1038/s41437-022-00549-7
PMID:35697755
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9411632/
Abstract

The detection of distribution patterns of genetic diversity of plant and animal species has contributed to the understanding of biodiversity and evolutionary history of the Atlantic Forest. We used microsatellite markers to access the genetic diversity and structure of 26 populations and 527 adult individuals of Euterpe edulis, a native palm which is an important food resource for fauna and is intensively exploited due to economic reasons. We found high genetic diversity and inbreeding in all populations analyzed. We report highest rates of inbreeding for this species, which could reflect the anthropic impacts of selective cutting, fragmentation, and change in foraging behavior from pollinators and less availability and mobility of large dispersers. We detected by STRUCTURE, two genetic groups, Northern and Southern, which divide the Brazilian Atlantic Forest geographically. These groups have low genetic admixtures, but we found a region of lineage hybridization in the contact zone with low recent gene flow. Distribution pattern of this species corroborates results from previous studies reporting the Last Glacial Maximum (LGM) have shaped the structuring of the species through movements of forests' expansion and contraction. The STRUCTURE analysis of each group revealed the presence of genetic subgroups with low rates of recurrent gene flow. Southern subgroups have higher rates of admixtures than the Northern subgroups, revealing greater historical connectivity of forests in this region.

摘要

植物和动物物种遗传多样性分布模式的检测有助于了解大西洋森林的生物多样性和进化历史。我们使用微卫星标记来评估 26 个种群和 527 个成年个体的遗传多样性和结构,这些个体属于本地棕榈树 Euterpe edulis,它是动物群的重要食物资源,由于经济原因而受到密集开发。我们在所有分析的种群中都发现了高度的遗传多样性和近亲繁殖。我们报告了该物种的最高近亲繁殖率,这可能反映了选择性砍伐、碎片化以及传粉者觅食行为的变化,以及大型扩散者的可利用性和流动性降低所带来的人为影响。通过 STRUCTURE 分析,我们发现了两个遗传群体,北方和南方,它们在地理上划分了巴西大西洋森林。这些群体的遗传混合程度较低,但我们在与低近期基因流的接触区域发现了一个谱系杂交区域。该物种的分布模式证实了先前的研究结果,即末次冰盛期(LGM)通过森林扩张和收缩的运动塑造了物种的结构。对每个群体的 STRUCTURE 分析表明,存在遗传亚群,其基因流的复发率较低。南方亚群的混合率高于北方亚群,这表明该地区森林的历史连通性更大。